| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,796,691 – 10,796,786 |
| Length | 95 |
| Max. P | 0.576221 |
| Location | 10,796,691 – 10,796,786 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 85.02 |
| Shannon entropy | 0.19333 |
| G+C content | 0.45391 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -18.87 |
| Energy contribution | -19.20 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10796691 95 - 22422827 UCGCUGAACUCGCUCACUUUUGGCGCACUUCAAAACGACAAAGUGAAAACGUGAAAAUUAAGACCCGGGCGAAACGAGAUCAUUAAGUGAGUUCC .....((((((((((((.(((....(((((..........))))).))).))))...((((((.(((.......)).).)).)))))))))))). ( -20.20, z-score = -0.06, R) >droSec1.super_15 1499818 77 - 1954846 UCGCUGAACUCGCUCACUUUUGGCGCACUUCAAAGCGACUAAGUGAAAACGU------------------GAAACGAGAUCAUUAAGUGAGUUCC .....((((((((((((((....(((........)))...))))))...((.------------------....))..........)))))))). ( -22.00, z-score = -1.81, R) >droSim1.chrX_random 3050176 77 - 5698898 UCGCUGAACUCGCUCACUUUUGGCGCACUUCAAAGCGACUAAGUGAAAACGU------------------GAAACGAGAUCAUUAAGUGAGUUCC .....((((((((((((((....(((........)))...))))))...((.------------------....))..........)))))))). ( -22.00, z-score = -1.81, R) >consensus UCGCUGAACUCGCUCACUUUUGGCGCACUUCAAAGCGACUAAGUGAAAACGU__________________GAAACGAGAUCAUUAAGUGAGUUCC .....((((((((((((((....(((........)))...))))))...(((.....................)))..........)))))))). (-18.87 = -19.20 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:32 2011