| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,781,121 – 10,781,227 |
| Length | 106 |
| Max. P | 0.534972 |
| Location | 10,781,121 – 10,781,227 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 65.71 |
| Shannon entropy | 0.52837 |
| G+C content | 0.49572 |
| Mean single sequence MFE | -29.95 |
| Consensus MFE | -13.39 |
| Energy contribution | -14.07 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10781121 106 - 22422827 ----GGCUUGUCAACUUCGCUCUGUGUUUUGCAUUCGCGAUCGCUAAUUGGCAGCCAAGUGCGGUCGGUCGAUUCACAUGGCGAGUUUUAGGUUGACACAACACCCACAG ----....(((((((((((((.((((..(((....(.(((((((...((((...))))..)))))))).)))..)))).)))))......))))))))............ ( -36.30, z-score = -2.14, R) >droEre2.scaffold_4690 14400199 90 + 18748788 -----GCUUGUCAACC---CGCUGUGUUUUGCAUUCGCGAUCGCUAAUUGGCAGCCAAGUGCGG----UCGAUCCACAUGGCGAGUUGUGGGUUGACACAAC-------- -----...((((((((---(((..(((..((......(((((((...((((...))))..))))----))).....))..)))....)))))))))))....-------- ( -36.90, z-score = -2.72, R) >droYak2.chrX 10430131 100 + 21770863 ---GGGCUUGUCAACC---CGCUGUAUUUUGCAUUCGCGAUCGCUAAUUGGCAGCCAAGUGCGG----UCGAUCCACAUGGCGAGUUGUCGGUUGACACAACACCCACAG ---(((..((((((((---.((........))((((((((((((...((((...))))..))))----))....(....)))))))....)))))))).....))).... ( -34.90, z-score = -1.61, R) >droWil1.scaffold_181096 4971821 92 + 12416693 GAAAGAGUUGUCAAAC---CUUUGCGAUUUGCG---AUAUUUGCUAAUUGA-AUUCACCUAGGC----ACAUUAGACUUUGAAAGUGACA--UCGAUACCAAACA----- ......(.(((((...---.....(((((.(((---(...)))).))))).-.((((.((((..----...))))....))))..)))))--.)...........----- ( -11.70, z-score = 0.92, R) >consensus ____GGCUUGUCAACC___CGCUGUGUUUUGCAUUCGCGAUCGCUAAUUGGCAGCCAAGUGCGG____UCGAUCCACAUGGCGAGUUGUAGGUUGACACAACACC_____ ........((((((((.......(((...(((....)))..))).........((((.(((((......))...))).))))........))))))))............ (-13.39 = -14.07 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:31 2011