| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,760,181 – 10,760,286 |
| Length | 105 |
| Max. P | 0.903461 |
| Location | 10,760,181 – 10,760,286 |
|---|---|
| Length | 105 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 90.05 |
| Shannon entropy | 0.17640 |
| G+C content | 0.26906 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -13.48 |
| Energy contribution | -14.21 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10760181 105 + 22422827 AAGAAGACUAAAUAAA-CUGAUAUAUACAUGA--GAAUACAUG-AUAUAUAUAGAGACCCAGUCCUGUAUAUAUUUGUAUAU--GUAUAUUUUUUACAGCAUUCAAACCGA ..(((..((...((((-.....((((((((..--..(((((.(-((((((((((.(((...)))))))))))))))))))))--))))))..)))).))..)))....... ( -21.80, z-score = -3.54, R) >droSim1.chrX 8345101 105 + 17042790 AAGAAGACUAAAUAAA-CUGAUAUAUACAUGA--GAAUACAUG-AUAUAUAUAGAGACCCAGUCCUGUAUAUAUUUGUAUAU--GUAUAUUUUUUACAGCAUUCAAACCGA ..(((..((...((((-.....((((((((..--..(((((.(-((((((((((.(((...)))))))))))))))))))))--))))))..)))).))..)))....... ( -21.80, z-score = -3.54, R) >droSec1.super_15 1463489 105 + 1954846 AAGAAGACUAAAUAAA-CUGAUAUAUACAUGA--GAAUACAUG-AUAUAUAUAGAGACCCAGUCCUGUAUAUAUUUGUAUAU--GUAUAUUUUUUACAGCAUUCAAACCGA ..(((..((...((((-.....((((((((..--..(((((.(-((((((((((.(((...)))))))))))))))))))))--))))))..)))).))..)))....... ( -21.80, z-score = -3.54, R) >droYak2.chrX 19331809 105 + 21770863 AAGAAGACUAAAUAAA-CUGAUAUAUACAUGA--GAAUACAUG-AUAUAUAUAGAGACCCAGUCCUGUAUAUAUUUGUAUAU--GUAUAUUUUUUACAGCAUUCAAACCGA ..(((..((...((((-.....((((((((..--..(((((.(-((((((((((.(((...)))))))))))))))))))))--))))))..)))).))..)))....... ( -21.80, z-score = -3.54, R) >droEre2.scaffold_4690 14379444 105 - 18748788 AAGAAGACUAAAUAAA-CUGAUAUAUACAUGA--GAAUACAUG-AUAUAUAUAGAGACCCAGUCCUGUAUAUAUUUGUAUAU--GUAUAUUUUUUACAGCAUUCCAACCGA ................-(((..((((((((..--..(((((.(-((((((((((.(((...)))))))))))))))))))))--))))))......)))............ ( -21.30, z-score = -3.47, R) >dp4.chrXL_group1a 3896594 111 + 9151740 AAGAAGACUUAAUAAAAUUGAUAUAUACACGAAUGCAUACAUAUAUAUAGCGGGAGAGACAGUCCUAUAUAUAUUUGUGUAUACGUAUAUUUUUUACAGCAAUCAAAUUGA ..............................((.((((((((.(((((((..((((.......)))).))))))).)))))....(((.......))).))).))....... ( -19.10, z-score = -1.33, R) >droPer1.super_11 458364 111 + 2846995 AAGAAGACUUAAUAAAAUUGAUAUAUACACGAAUGCAUACAUAUAUAUAGCGGGAGAGACAGUCCUAUAUAUAUUUGUGUAUACGUAUAUUUUUUACAGCAAUCAAAUUGA ..............................((.((((((((.(((((((..((((.......)))).))))))).)))))....(((.......))).))).))....... ( -19.10, z-score = -1.33, R) >consensus AAGAAGACUAAAUAAA_CUGAUAUAUACAUGA__GAAUACAUG_AUAUAUAUAGAGACCCAGUCCUGUAUAUAUUUGUAUAU__GUAUAUUUUUUACAGCAUUCAAACCGA ..(((..((...((((...(((((((.(......).(((((...((((((((((.((.....)))))))))))).)))))....))))))).)))).))..)))....... (-13.48 = -14.21 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:30 2011