| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,759,014 – 10,759,105 |
| Length | 91 |
| Max. P | 0.702143 |
| Location | 10,759,014 – 10,759,105 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 69.98 |
| Shannon entropy | 0.54904 |
| G+C content | 0.40812 |
| Mean single sequence MFE | -20.32 |
| Consensus MFE | -8.44 |
| Energy contribution | -8.88 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10759014 91 - 22422827 GUAAUCUAAUCUAUUUGACUGAGAAUGGAGCGUUGGAGCCUGAUCGCAAACCGAUUUAACUAGCACUUAAUUCUAGUAUUUGAUUUUAAAG- .......((((......(((.(((((.(((.(((((.....(((((.....)))))...))))).))).))))))))....))))......- ( -17.40, z-score = -0.93, R) >droSim1.chrX 8343913 91 - 17042790 GUAAUCUAAUCUAUCUGACUGAGAAUGGAGCGUUGGAGCCUGAUCGCAAACCGAUUUAACUAGCACUUAAUUCUAGUAUUUGAUUUUAGAG- ....(((((...(((..(((.(((((.(((.(((((.....(((((.....)))))...))))).))).))))))))....))).))))).- ( -21.80, z-score = -1.86, R) >droSec1.super_15 1462300 87 - 1954846 GUAAUCUAAUCG----GACUGAGAAUGGAGCGUUGGAGCCUGAUCGCAAACCGAUUUAACUAGCACUUAAUUCUAGUAUUUGAUUUCAGAG- ....((((((((----((...(((((.(((.(((((.....(((((.....)))))...))))).))).)))))....)))))))..))).- ( -19.70, z-score = -0.96, R) >droYak2.chrX 19330641 80 - 21770863 -----GUAAUCU----UACUGCGAACGGAGUGUUGGAGCCUGGUCGCAAACCGAUUUAACUAGCACUUAUUUCUAGUAUUUGAUUUUAG--- -----..((((.----(((((.(((..(((((((((.....(((((.....)))))...)))))))))..))))))))...))))....--- ( -20.40, z-score = -1.99, R) >droEre2.scaffold_4690 14378365 80 + 18748788 -----GUAAUCU----UACUGCGAACGGAGUGUUGGAGCCUGGUCGCAAACCGAUUUAUCUAGCACUUAUUUCUAGUAUUUGAUUUUAG--- -----..((((.----(((((.(((..((((((((((....(((((.....)))))..))))))))))..))))))))...))))....--- ( -23.50, z-score = -3.11, R) >droAna3.scaffold_13417 2258486 71 - 6960332 -----------------GUUGGUCCGGGUGCGAUGCGAUCGGG--ACUAACUUAU--GACUAAACUUUGAGUUUUGUAUCGGGUGGGGGGGA -----------------((((((((.(((((...)).))).))--))))))....--..((..((((.((........))))))..)).... ( -19.10, z-score = -0.85, R) >consensus _____CUAAUCU____GACUGAGAAUGGAGCGUUGGAGCCUGAUCGCAAACCGAUUUAACUAGCACUUAAUUCUAGUAUUUGAUUUUAGAG_ .................((((.(((..(((.(((((.....(((((.....)))))...))))).)))..)))))))............... ( -8.44 = -8.88 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:29 2011