| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,945,338 – 10,945,396 |
| Length | 58 |
| Max. P | 0.540674 |
| Location | 10,945,338 – 10,945,396 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 91.95 |
| Shannon entropy | 0.11083 |
| G+C content | 0.47701 |
| Mean single sequence MFE | -15.87 |
| Consensus MFE | -13.53 |
| Energy contribution | -13.20 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10945338 58 + 23011544 UUACCAUGGGGAAACUGCUUGGCGGAGAUGAGGACUUUUGCACAGUAGUUUACCCACA ......((((.((((((((..((((((........))))))..)))))))).)))).. ( -19.70, z-score = -3.00, R) >droSim1.chr2L 10751592 58 + 22036055 UUACCAUGGGAAAAGUGCUUGGCGAAGAUGAGGACUUCCGCACAGUAGUUUACCAACA ......(((..(((.((((..((((((.......))).)))..)))).))).)))... ( -12.60, z-score = -0.51, R) >droSec1.super_3 6355904 58 + 7220098 UUACCAUGGGAAAACUGCUUGGCGAAGAUGAGGACUUCCGCACAGUGGUUUACCAACA ......(((..((((..((..((((((.......))).)))..))..)))).)))... ( -15.30, z-score = -1.33, R) >consensus UUACCAUGGGAAAACUGCUUGGCGAAGAUGAGGACUUCCGCACAGUAGUUUACCAACA ........((.((((((((..((((((.......))).)))..)))))))).)).... (-13.53 = -13.20 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:15 2011