| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,758,599 – 10,758,691 |
| Length | 92 |
| Max. P | 0.778967 |
| Location | 10,758,599 – 10,758,691 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 87.25 |
| Shannon entropy | 0.23143 |
| G+C content | 0.33633 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -17.67 |
| Energy contribution | -18.75 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10758599 92 - 22422827 UUUAUACAGUUAUGCUGCCGCACGC-UUUUAU-GUGUGCACGUGGUAUA----AUUGGUUUUUAUUAAUCCAUAUAUUAUAU-CAUAUU---GUGUGUAGCA ............(((((((((((((-......-))))))..((((((((----(((((.((.....)).)))...)))))))-)))...---..).)))))) ( -26.60, z-score = -2.53, R) >droAna3.scaffold_13417 2258110 101 - 6960332 -UUACAGAUAUAUGCAUCCGCACGCUUGUUGUGGCAAGCGAGUCGGAUAUACCACUUGUUUUUAUUAAUCCAUAUAUUAUGUAUAUAUUAUAUUGUGUAGCA -.(((((((((((((((((((.(((((((....))))))).).)))))........((..((....))..))........)))))))))....))))..... ( -24.80, z-score = -1.41, R) >droEre2.scaffold_4690 14377945 91 + 18748788 UUUAUACAGUUAUGCUGCCGCACGCGUUUUAU-GUGUGCACGUGGUAUA----AUUGGUUUUUAUUAGUCCAUAUAUUAUAU-CAUAU-----UGUGUAGCA ............(((((((((((((((...))-))))))..((((((((----(((((...........)))...)))))))-)))..-----.).)))))) ( -26.40, z-score = -2.41, R) >droYak2.chrX 19330215 91 - 21770863 UUUAUACAGUUAUGCUGCCGCACGCGUUUUAU-GUGUGCACGUGGUAUA----AUUGGUUUUUAUUAGUCCAUAUAUUAUAU-CAUAU-----UGUGUAGCA ............(((((((((((((((...))-))))))..((((((((----(((((...........)))...)))))))-)))..-----.).)))))) ( -26.40, z-score = -2.41, R) >droSec1.super_15 1461877 92 - 1954846 UUUAUACAGUUAUGCUGCCGCACGC-UUUUAU-GUGUGCACGUGGUAUA----AUUGGUUUUUAUUAGUCCAUAUAUUAUAU-CAUAUU---GUGUGUAGCA ............(((((((((((((-......-))))))..((((((((----(((((...........)))...)))))))-)))...---..).)))))) ( -26.40, z-score = -2.30, R) >droSim1.chrX 8343490 92 - 17042790 UUUAUACAGUUAUGCUGCCGCACGC-UUUUAU-GUGUGCACGUGGUAUA----AUUGGUUUUUAUUAGUCCAUAUAUUAUAU-CAUAUU---GUGUGUAGCA ............(((((((((((((-......-))))))..((((((((----(((((...........)))...)))))))-)))...---..).)))))) ( -26.40, z-score = -2.30, R) >consensus UUUAUACAGUUAUGCUGCCGCACGC_UUUUAU_GUGUGCACGUGGUAUA____AUUGGUUUUUAUUAGUCCAUAUAUUAUAU_CAUAUU___GUGUGUAGCA ............(((((((((((((........))))))..((((((((....((((((....))))))...))))))))..............).)))))) (-17.67 = -18.75 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:28 2011