| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,739,308 – 10,739,403 |
| Length | 95 |
| Max. P | 0.634158 |
| Location | 10,739,308 – 10,739,403 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 83.85 |
| Shannon entropy | 0.28023 |
| G+C content | 0.50954 |
| Mean single sequence MFE | -32.48 |
| Consensus MFE | -21.96 |
| Energy contribution | -21.32 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10739308 95 - 22422827 UGUCGGCACGAGCUAAAAGUGCAAUGAA--GUCGAGCCUUUGGUGGUUUGACAGUUGCCAUGACCCUCACCUAAAUGGUUUCCCAUUUUAAGGGCUU-- ....(((((..((.......))......--((((((((......)))))))).).))))....((((.....((((((....))))))..))))...-- ( -29.00, z-score = -1.42, R) >droEre2.scaffold_4690 14358986 94 + 18748788 CGUCCCCACGAGCUGAAAGUGCAAUGCA--GCCGAGCCUUUGGUGGUUUGGCAGUUGGGAUGACCCUCACCUAAAUGGGUUCCCAUGUGAAGGCCU--- ((((((.((..((.......))......--((((((((......)))))))).)).)))))).((.((((....((((....)))))))).))...--- ( -36.50, z-score = -2.03, R) >droYak2.chrX 19311034 96 - 21770863 CGUCCGCAUGAGCC---AGUGCACUGCACUGCCGAGCCUUUGGUAGUUCGGCAGUUGGGAUGACCCUCACCUUAAUGGUUUCCCAUUUAAAAGGGCUUU (((((((((.....---.)))).....((((((((((........))))))))))..))))).((((......(((((....)))))....)))).... ( -35.50, z-score = -2.28, R) >droSec1.super_15 1442903 95 - 1954846 UGUCCCCACGAGCUAAAAGUGCAAUGGA--GUCGAGCCUUUGGUGGCUUGACAGUUGCCAUGAUCCUCACCUAAAUGGGUUCCCAUUUUAAGGGUUU-- ....(((..(((......(.(((((...--((((((((......)))))))).))))))......)))....((((((....))))))...)))...-- ( -31.70, z-score = -2.00, R) >droSim1.chrX 8338748 95 - 17042790 UGUCCCCACGAGCUAAAAGUGCAAUGGA--GUCGAGCCUUUGGUGGUUUGACAGUUGCCAUGACCCUCACCCAAAUGGGUUCCCAUUUUAAGGGUUU-- .........(((......(.(((((...--((((((((......)))))))).))))))......)))((((((((((....))))))...))))..-- ( -29.70, z-score = -1.31, R) >consensus UGUCCCCACGAGCUAAAAGUGCAAUGCA__GUCGAGCCUUUGGUGGUUUGACAGUUGCCAUGACCCUCACCUAAAUGGGUUCCCAUUUUAAGGGCUU__ .(((....(((((.......))........((((((((......))))))))..)))....))).....(((((((((....))))))...)))..... (-21.96 = -21.32 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:25 2011