| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,731,957 – 10,732,019 |
| Length | 62 |
| Max. P | 0.924434 |
| Location | 10,731,957 – 10,732,019 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 68.85 |
| Shannon entropy | 0.54377 |
| G+C content | 0.41017 |
| Mean single sequence MFE | -17.82 |
| Consensus MFE | -8.98 |
| Energy contribution | -9.86 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10731957 62 + 22422827 UAUAUAUGUACGUACACAUGUGCGCCAUAUAUAU--GACCAUGGUGCUAUGUGCUUCAGAGAUU ..............((((((.(((((((......--....)))))))))))))........... ( -15.30, z-score = -0.26, R) >droEre2.scaffold_4690 14351572 52 - 18748788 ---AUAUGUACGAACACAUAUGCGCCGUACAUGG--------UGUACUAUGUG-UACAGAGAAU ---........(.((((((((((((((....)))--------)))).))))))-).)....... ( -16.00, z-score = -1.98, R) >droYak2.chrX 19303381 53 + 21770863 ---------AUAUACACAUAUGAGCCAAUGAUGG-CUAUGUGUGUACUGUGUG-CACAGAGAAU ---------...(((((((((.(((((....)))-)))))))))))((((...-.))))..... ( -20.40, z-score = -3.74, R) >droSec1.super_15 1435637 57 + 1954846 ---AUAUGUACGUACGCAUUUGCGCCAUAUAUGG----CAAUGGUGCUAUGUGCUUCAGAGAUU ---....(((((((.(((((...((((....)))----)...)))))))))))).......... ( -18.20, z-score = -1.64, R) >droSim1.chrX 8331585 61 + 17042790 ---AUAUGUACGUGCACAUGUGCGCCAUAUAUGGAUGGCAAUGGUGCUAUGUGCUUCAGAGAUU ---....((((((((((...(((.(((....)))...)))...)))).)))))).......... ( -19.20, z-score = -0.81, R) >consensus ___AUAUGUACGUACACAUAUGCGCCAUAUAUGG____CAAUGGUGCUAUGUGCUUCAGAGAUU ..............((((((.(((((((............)))))))))))))........... ( -8.98 = -9.86 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:24 2011