| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,719,194 – 10,719,294 |
| Length | 100 |
| Max. P | 0.976408 |
| Location | 10,719,194 – 10,719,294 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.57 |
| Shannon entropy | 0.48759 |
| G+C content | 0.57320 |
| Mean single sequence MFE | -40.95 |
| Consensus MFE | -23.12 |
| Energy contribution | -24.68 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10719194 100 + 22422827 ----UACAGCCGGCUGGCUGUGAGUUCUGAACUCUCAGUCUGGGCUCUAGCCCUAGCCUAGUCCAAAAAAAAGGGACGAGGAUACGAGCUGGGAGGGU-UUAACG ----(((((((....))))))).(((..(..((((((((..((((....))))...(((.((((.........)))).)))......))))))))..)-..))). ( -40.30, z-score = -2.44, R) >droPer1.super_13 998047 91 + 2293547 ----UACAGCCGGCUCUCGCACUGUCCUGGGCCGU-AGCUCUAGCUCUAGCUCUACCUCUAGCCAUGA----UUGAGGGGGAUAC----UGCGAGAGU-UAGACA ----....((..(((((((((.((((((((((...-(((....)))...))))..((((.........----..)))))))))).----)))))))))-..).). ( -38.40, z-score = -2.07, R) >droEre2.scaffold_4690 14337785 97 - 18748788 ----CACAGCCGGCUGGUUGUGAGUUCUAGACUCUCAGUCUGGGCGCUAGCUCUAGCCUAGUCCAAAA----AGGACGAGGGUACGGGCUGGGAGGGGGUUAGCG ----(((((((....)))))))...(((((((.....)))))))((((((((((..((((((((....----.............))))))))..)))))))))) ( -45.73, z-score = -3.32, R) >droYak2.chrX 19290894 100 + 21770863 UACAGCCGGCUGGCUGGUCGUGCGUUCUGAACUCUCAGUCUGGGCUCUAGCUCUAGCCUAGUCCAAAG----UGGACGAGGGUACGAGUUGGGUGGCG-UUAGCA ..(((((....)))))(((((.((..((((....))))..)).))((((((((((.(((.((((....----.)))).))).)).)))))))).))).-...... ( -39.50, z-score = -0.90, R) >droSec1.super_15 1422630 97 + 1954846 ----UACAGCCGGCUGGCUGUGAGUUCUGAACUCUCAGUCUGGGCUCUAGCCCUAGCCUAGUCCAAAAC---GGGACGAGGGUACGAGCUGGGAGGGG-UUAACG ----(((((((....))))))).(((.....((((((((..((((....))))((.(((.((((.....---.)))).))).))...))))))))...-..))). ( -40.80, z-score = -1.66, R) >consensus ____UACAGCCGGCUGGCUGUGAGUUCUGAACUCUCAGUCUGGGCUCUAGCUCUAGCCUAGUCCAAAA____GGGACGAGGGUACGAGCUGGGAGGGG_UUAACG ....(((((((....))))))).(((.....((((((((..((((....))))((.(((.((((.........)))).))).))...))))))))......))). (-23.12 = -24.68 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:22 2011