| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,718,864 – 10,718,956 |
| Length | 92 |
| Max. P | 0.639420 |
| Location | 10,718,864 – 10,718,956 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.51 |
| Shannon entropy | 0.33224 |
| G+C content | 0.28440 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -13.46 |
| Energy contribution | -13.35 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10718864 92 - 22422827 AUAUAGAUAGUCAGAGGUAGAAAGAUG----------UAUAUCCUUGAAAGAUCUAUCUAAAUGAUUGUUGUAUCUUAACAAAUAUGGCUUGAAGUUAAAGA .....((((((((.(((((((..(((.----------...))).((....)))))))))...))))))))...............((((.....)))).... ( -14.10, z-score = 0.23, R) >droSec1.super_15 1422303 87 - 1954846 AUAUAGAUAGUCAGAGGUAGAAGGAUGUACAUACA--UAUAUCCUUGAAAGACCUAUCUAUAAGAUUGUUGUAUCUUAACAAACAAAGA------------- .(((((((((((........(((((((((......--)))))))))....)).))))))))).(.((((((.....)))))).).....------------- ( -20.30, z-score = -2.35, R) >droSim1.chrX_random 3013605 92 - 5698898 AUAUAGAUAGUCAGAGGUAGAAGGAUGUACAUACAUAUAUAUUCCUGAAAGACCUAUCUAUAAGAUUGUUGUAUCUUAACAAAUAUUAAAGA---------- .(((((((((((((..(((.....((((....))))...)))..)))).....)))))))))...((((((.....))))))..........---------- ( -20.10, z-score = -1.97, R) >consensus AUAUAGAUAGUCAGAGGUAGAAGGAUGUACAUACA__UAUAUCCUUGAAAGACCUAUCUAUAAGAUUGUUGUAUCUUAACAAAUAUAGA_____________ .(((((((((((((.((((....................)))).)))).....)))))))))...((((((.....)))))).................... (-13.46 = -13.35 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:21 2011