| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,711,517 – 10,711,568 |
| Length | 51 |
| Max. P | 0.780578 |
| Location | 10,711,517 – 10,711,568 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 75.48 |
| Shannon entropy | 0.40259 |
| G+C content | 0.39691 |
| Mean single sequence MFE | -7.54 |
| Consensus MFE | -5.60 |
| Energy contribution | -4.97 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10711517 51 - 22422827 GGAUUCUAUGUGAAACUCGCUUUUAGUGUC-CUUCCACAUCUAACACAAUCC-------------- ((((.(((.(((.....)))...))).)))-)....................-------------- ( -9.00, z-score = -2.14, R) >droSim1.chrX_random 3003251 51 - 5698898 GGAUUCAAUGUGAAACUCGCUUUUAGUGUC-CUUCCACAUCUAACACAAUCC-------------- (((((..(((((.....(((.....)))..-....))))).......)))))-------------- ( -6.50, z-score = -0.76, R) >droSec1.super_15 1409197 51 - 1954846 GGAUUCAAUGUGAAACUCGCUUUUAGUGUC-CUUCCACAUCUAACACAAUCC-------------- (((((..(((((.....(((.....)))..-....))))).......)))))-------------- ( -6.50, z-score = -0.76, R) >droYak2.chrX 19282807 51 - 21770863 GGAUUCUUUGUGAAACUCGCUUUAAGUGUC-CUUCCACAUCUAACACAAUCC-------------- ((((.(((.(((.....)))...))).)))-)....................-------------- ( -8.60, z-score = -1.89, R) >droEre2.scaffold_4690 14329996 51 + 18748788 GGAUUCAAUGCGAAACUCGCUUUAAGUGUC-CUUCCACAUCUAACACAAUCC-------------- (((((....(((.....))).....((((.-............)))))))))-------------- ( -8.32, z-score = -2.14, R) >droMoj3.scaffold_6328 873342 66 - 4453435 GAAUAUUGUGUUAAAUAAACUUUUUGUGUUGCGCCUACAUAUACCGUGUUUCAUUUAAGAAAAACC ........(.((((((((((....(((((.......)))))......)))).)))))).)...... ( -6.30, z-score = 0.33, R) >consensus GGAUUCAAUGUGAAACUCGCUUUUAGUGUC_CUUCCACAUCUAACACAAUCC______________ (((((....(((.....))).....(((.......))).........))))).............. ( -5.60 = -4.97 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:21 2011