| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,927,644 – 10,927,734 |
| Length | 90 |
| Max. P | 0.812437 |
| Location | 10,927,644 – 10,927,734 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 81.00 |
| Shannon entropy | 0.36317 |
| G+C content | 0.44338 |
| Mean single sequence MFE | -27.81 |
| Consensus MFE | -14.89 |
| Energy contribution | -15.44 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10927644 90 + 23011544 AUAACUUGCACUUGAGUGUGUGUGUG--------AACUGCAACUAAUGAUGUUGCAGGCACUCGCA------UGCGGCUUUUUGAUUUAACGAUCGCAGUUCAC--------- ...((.(((((....))))).))(((--------((((((..........((((((.((....)).------)))))).....((((....)))))))))))))--------- ( -29.30, z-score = -1.88, R) >droSim1.chr2L 10728027 88 + 22036055 AUAACUUGCACUUGAGUGUGUGUG----------AACUGCAACUAAUGAUGUUGCAGGCACUCGCA------UGCGGCUUUUUGAUUUAACGAUCGCAGUUCAC--------- .......((((......))))(((----------((((((..........((((((.((....)).------)))))).....((((....)))))))))))))--------- ( -28.90, z-score = -2.21, R) >droSec1.super_3 6338617 88 + 7220098 AUAACUUGCACUUGAGUGUGUGUG----------AACUGCAACUAAUGAUGUUGCAGGCACUCGCA------UGCGGCUUUUUGAUUUAACGAUCGCAGUUCAC--------- .......((((......))))(((----------((((((..........((((((.((....)).------)))))).....((((....)))))))))))))--------- ( -28.90, z-score = -2.21, R) >droYak2.chr2L 7327662 98 + 22324452 AUAACUUGCACUUGAGUGUGUGUGUGAGUGUGUGAACUGCAACUAAUGAUGUUGCAGGCACUCGCA------UGCGGCUUUCUGAUUUAACGAUCGCAGUUGAC--------- .(((((.((....((((.(((((((((((((.....(((((((.......))))))))))))))))------))))))))...((((....)))))))))))..--------- ( -36.00, z-score = -2.89, R) >droEre2.scaffold_4929 12129905 88 - 26641161 AUAACUUGCACUUGAGUGUGUGUG----------AACUGCAACUAAUGAUGUUGCAGGCACUCGCA------UGCGGCUUUCUGAUUUAACGAUCGCAGUUCGC--------- .......((((......))))(((----------((((((.......((.((((((.((....)).------))))))..)).((((....)))))))))))))--------- ( -28.90, z-score = -1.87, R) >droAna3.scaffold_12916 14785850 82 + 16180835 AUAACUUGCUCUUGAGGUUGUGUG----------AACUGCAACUAAUGAUGUUGCAGGCACUCGCA------UGCGGCUUUUUGAUUUAACGAUCGAG--------------- ........(((..(((((((((((----------..(((((((.......))))))).......))------)))))))))..((((....)))))))--------------- ( -22.70, z-score = -1.60, R) >droPer1.super_1 759403 98 + 10282868 AUAGCCUGCACCCGAGAGUGUAUG----------AGCUGCAACUAAUGAUGUUACAGGCACUCGCACUGGCAUGCCUCUUUUUUAUCUAACGAUCGAGCGCAGUUUAC----- .(((.((((.(.((((((.(((((----------..(((.(((.......))).)))((....)).....)))))))).......((....))))).).)))).))).----- ( -23.80, z-score = 0.02, R) >dp4.Unknown_group_260 44208 98 + 94298 AUAUCCUGCACCCGAGAGUGUAUG----------AGCUGCAACUAAUGAUGUUACAGGCACUCGCACUGGCAUGCCUCUUUUUUAUCUAACGAUCGGGCGCAGUUUGC----- .((..((((.((((((((.(((((----------..(((.(((.......))).)))((....)).....)))))))).......((....))))))).))))..)).----- ( -31.10, z-score = -1.88, R) >droWil1.scaffold_181132 546960 89 + 1035393 AUAACUUGCGCUUGAGUGUGUAUG----------AACUGCAACUAAUGAUGUUGCAGGCACUCGAA------UGCGCCUUUUUGAUUUAACGAUCGGCAGUGGAG-------- ...(((.(((.((((((((.....----------..(((((((.......))))))))))))))).------)))(((...(((......)))..))))))....-------- ( -27.51, z-score = -2.14, R) >droMoj3.scaffold_6500 27724137 88 - 32352404 AUAACUUGCGCUUGAGUGUGUAUG----------AACUGCAACUAAUGAUGUUGCAGGCACUCGAA------UGCGCCUUUUUGAUUUAACGAUCGACUUUUUU--------- .......((((((((((((.....----------..(((((((.......))))))))))))))).------.))))....((((((....)))))).......--------- ( -26.71, z-score = -3.80, R) >droVir3.scaffold_13246 1273191 97 + 2672878 AUAACUUGCGCUUGAGUGUGUAUG----------AACUGCAACUAAUGAUGUUGCAGGCACUCGAA------UGCGCCUUUUUGAUUUAACGAUCGACUUUUUUCUCCCAGUC .......((((((((((((.....----------..(((((((.......))))))))))))))).------.))))....((((((....))))))................ ( -26.71, z-score = -2.78, R) >droGri2.scaffold_15252 1247604 88 - 17193109 AUAACUUGCGCUUGAGUGUGUAUG----------AACUGCAACUAAUGAUGUUGCAGGCACUCGAA------UUCGCCUUUUUGAUUUAACGAUCGACUUUUUU--------- .......(((.((((((((.....----------..(((((((.......))))))))))))))).------..)))....((((((....)))))).......--------- ( -23.21, z-score = -2.79, R) >consensus AUAACUUGCACUUGAGUGUGUAUG__________AACUGCAACUAAUGAUGUUGCAGGCACUCGCA______UGCGGCUUUUUGAUUUAACGAUCGAAGUUCAC_________ ......(((((......)))))..............(((((((.......))))))).....((((......))))......(((((....)))))................. (-14.89 = -15.44 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:14 2011