| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,701,518 – 10,701,579 |
| Length | 61 |
| Max. P | 0.778342 |
| Location | 10,701,518 – 10,701,579 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 75.74 |
| Shannon entropy | 0.47449 |
| G+C content | 0.38921 |
| Mean single sequence MFE | -8.35 |
| Consensus MFE | -5.73 |
| Energy contribution | -5.68 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10701518 61 - 22422827 CAGCGAUUCGCUUCACUUUUCUCUCCUCUUAAUUCUGUAUUAACCUUAAGCUGGUUGUUGC (((((((..((((..................................))))..))))))). ( -7.98, z-score = -0.78, R) >droEre2.scaffold_4690 14319975 61 + 18748788 CAGCGAUUCGCUUCACUUUUCUCUCCUCUUAAUUCUGUAUUAACUUUAAGCGGAUUGUUGC (((((((((((((..................................))))))))))))). ( -13.18, z-score = -2.99, R) >droYak2.chrX 19271842 61 - 21770863 CAGCGAUUCGCUUCACUUUUCUCUCCUCUUAAUUCUGUAUUAACUUUAAGCGGGUUGUUGC (((((((((((((..................................))))))))))))). ( -12.68, z-score = -2.55, R) >droSec1.super_15 1399106 61 - 1954846 CAGCGAUUCGCUUCACUUUUCUCUCCUCUUAAUUUUGUAUUAACUUUAAGCUGGUUGUUGC (((((((..((((..................................))))..))))))). ( -7.98, z-score = -0.79, R) >droSim1.chrX 8320209 55 - 17042790 CAGCGAUUCGCUUCACU------UCCUCUUAAUUCUGCAUUAACUUUAAGCUGGUUGUUGC (((((((..((((....------........................))))..))))))). ( -8.19, z-score = -0.40, R) >apiMel3.Group14 2317828 52 + 8318479 ----AAGCUGUUUCAAUAUUUUGUGAUCUC--CUCUCUUUUCAUCCCUAACUUUUUGA--- ----..................((((....--........))))..............--- ( -0.10, z-score = 1.35, R) >consensus CAGCGAUUCGCUUCACUUUUCUCUCCUCUUAAUUCUGUAUUAACUUUAAGCUGGUUGUUGC ((((((((.((((..................................)))).)))))))). ( -5.73 = -5.68 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:16 2011