| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,699,096 – 10,699,210 |
| Length | 114 |
| Max. P | 0.696241 |
| Location | 10,699,096 – 10,699,210 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.87 |
| Shannon entropy | 0.12386 |
| G+C content | 0.41849 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -24.74 |
| Energy contribution | -24.98 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.696241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10699096 114 - 22422827 -AGCGGCUCAAAUACCACACUUUUGAACCACUGUGCGCAUAUGUGUACUUCAAUUUCAAUCAUGCCC-----AGCAAAAGGUGCGAAUCCAUCAAAGUCAUAUGUUGCGUAUCUAGAUCA -((.((.(((((.........))))).)).))(((((((((((((.((((............(((..-----.)))...((((......)))).)))))))))).)))))))........ ( -24.40, z-score = -0.52, R) >droEre2.scaffold_4690 14317436 115 + 18748788 AAGUGGCUCAAAUACUACACUUUUGACCCACUGUGCGCACAUGUGUACUUCACAUUCAAUCAUUCAC-----AGCAAAAGGUGCGAAUCCAUCAAAGUCAUAUGUUGCGUAUUUAGAUCA .(((((.(((((.........))))).)))))(((((((((((((.((((...........((((.(-----(.(....).)).))))......)))))))))).)))))))........ ( -29.43, z-score = -2.35, R) >droYak2.chrX 19269286 119 - 21770863 -AGUGGCUCAAACACUAUACUUUUGAUCCACUGUGCGCACAUGUGUACUUCAAUUUCAAUCAUGCCCAAGUGAGCAAAAGGUGCGAAUCCAUCAAAGUCAUAUGUUGCGUAUCUAGAUCA -(((((.(((((.........))))).)))))(((((((((((((.((((....(((..((((......))))(((.....)))))).......)))))))))).)))))))........ ( -31.30, z-score = -1.96, R) >droSec1.super_15 1396582 114 - 1954846 -AGCGGCUCAAAUACCACACUUUUGAACCACUGUGCGCACAUGUGUACUUCAAUUUCAAUCAUGCCC-----AGCAAAAGGUGCGAAUCCAUCAAAGUCAUAUGUUGCGUAUCUAGAUCA -((.((.(((((.........))))).)).))(((((((((((((.((((............(((..-----.)))...((((......)))).)))))))))).)))))))........ ( -26.30, z-score = -1.02, R) >droSim1.chrX 8317771 114 - 17042790 -AGCGGUUCAAAUACCACACUUUCGAACCACUGUGCGCACAUGUGUACUUCAAUUUCAAUCAUGCCC-----AGCAAAAGGUGCGAAUCCAUCAAAGUCAUAUGUUGCGUAUCUAGAUCA -((.((((((((........))).))))).))(((((((((((((.((((............(((..-----.)))...((((......)))).)))))))))).)))))))........ ( -26.70, z-score = -1.50, R) >consensus _AGCGGCUCAAAUACCACACUUUUGAACCACUGUGCGCACAUGUGUACUUCAAUUUCAAUCAUGCCC_____AGCAAAAGGUGCGAAUCCAUCAAAGUCAUAUGUUGCGUAUCUAGAUCA .((.((.(((((.........))))).)).))(((((((((((((.((((............(((........)))...((((......)))).)))))))))).)))))))........ (-24.74 = -24.98 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:16 2011