| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,697,447 – 10,697,519 |
| Length | 72 |
| Max. P | 0.722495 |
| Location | 10,697,447 – 10,697,519 |
|---|---|
| Length | 72 |
| Sequences | 5 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 77.46 |
| Shannon entropy | 0.35618 |
| G+C content | 0.36678 |
| Mean single sequence MFE | -13.53 |
| Consensus MFE | -8.36 |
| Energy contribution | -8.92 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10697447 72 + 22422827 GCUUGUCGGGAAAAACAAACACACACA------UUUGCGAUCGCAUAGACUAAGGUUAGUUUUCUUGCAUUUUCUUUU----------- ...((.((((((((...(((.......------..(((....))).........)))..)))))))))).........----------- ( -11.47, z-score = -0.59, R) >droSim1.chrX 8316082 70 + 17042790 --GCAGCGGGAAAAACAAACACACACA------GUUGCAAUCGCAUAGACUAAGGUUAGUUUUCUUGCAUUUUCAUUU----------- --...(((((((((...(((.......------..(((....))).........)))..)))))))))..........----------- ( -14.27, z-score = -2.31, R) >droSec1.super_15 1394792 70 + 1954846 --GCAGCGGGAAAAACAAACACACACA------UUUGCAAUCGCAUAGACUAAGGUUAGUUUUCUUGCAUUUUCAUUU----------- --...(((((((((...(((.......------..(((....))).........)))..)))))))))..........----------- ( -14.27, z-score = -2.79, R) >droYak2.chrX 19267522 87 + 21770863 --GCUGCAGGAAAAACAAAUACACACACACACUAUUGCGAUUGCAUAGACUAAGGUUAGUUUUCUCAUUUUUUUCUUGCAUUUUCAUUU --..(((((((((((................((((.((....))))))((((....)))).........)))))))))))......... ( -15.70, z-score = -2.29, R) >droEre2.scaffold_4690 14315735 76 - 18748788 --UCUGCAGGAAAAACAAACACACACACACACAUUUGCGAUUGCAUAGUCUAAGGUUAGUUUUCUUGCAUUUCCAUUU----------- --..((((((((((...(((..........((...(((....)))..)).....)))..)))))))))).........----------- ( -11.96, z-score = -0.85, R) >consensus __GCAGCGGGAAAAACAAACACACACA______UUUGCGAUCGCAUAGACUAAGGUUAGUUUUCUUGCAUUUUCAUUU___________ .....(((((((((.....................(((....)))..(((....)))..)))))))))..................... ( -8.36 = -8.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:15 2011