| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,696,433 – 10,696,503 |
| Length | 70 |
| Max. P | 0.867845 |
| Location | 10,696,433 – 10,696,503 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 70.78 |
| Shannon entropy | 0.51085 |
| G+C content | 0.39954 |
| Mean single sequence MFE | -19.53 |
| Consensus MFE | -13.05 |
| Energy contribution | -14.25 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.867845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10696433 70 + 22422827 CAUAUAACCAGGUGUGCACACAUGU----------GUAUGUGUGAAUGUUGUUU---CUUUUACCUGACAUGUGACCGAUUCU (((((...((((((..(((((((..----------..)))))))..........---....))))))..)))))......... ( -15.89, z-score = -0.28, R) >droSec1.super_15 1393832 70 + 1954846 CAUAUAACCAGGUGUGCACACAUGU----------GCAUGUGUGAAUGUUGUUU---CUUUUACCUGACAUGUGACCGAUUCU (((((...(((((((((((....))----------))))....(((......))---)....)))))..)))))......... ( -17.20, z-score = -0.54, R) >droYak2.chrX 19266501 76 + 21770863 CAUUUUACCAGGUGUGCACACAUGUAUGU----GUGCAUGUGUGUUUGUUGUUC---CUUUUACCUGACAUGUGACCGAUUCU (((.....((((((.(((((((((((...----.))))))))))).........---....))))))....)))......... ( -21.44, z-score = -1.64, R) >droEre2.scaffold_4690 14314831 80 - 18748788 CAUUUUACCAGGUGUGCACACAUGUACAUAUGGGUGCAUGUGUGUAUGUUGUUC---CUUUUACCUGACAUGUGACCGAUUCU (((.....(((((((((((((((((((......)))))))))))))).......---.....)))))....)))......... ( -25.80, z-score = -1.82, R) >droMoj3.scaffold_6473 5774923 83 - 16943266 CGAAUGAGCUGAGCGGCAUAUUAGUUUUGUAGUAUGUUUGUGUGGAUGUUAAGUAAAUAUAAAAACCACAUGUGAAACAUUCU .(((((........(((((((((......))))))))).((((((...(((........)))...))))))......))))). ( -17.30, z-score = -1.14, R) >consensus CAUAUAACCAGGUGUGCACACAUGU_________UGCAUGUGUGAAUGUUGUUU___CUUUUACCUGACAUGUGACCGAUUCU (((((...((((((..(((((((((((......))))))))))).................))))))..)))))......... (-13.05 = -14.25 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:14 2011