| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,658,116 – 10,658,227 |
| Length | 111 |
| Max. P | 0.792379 |
| Location | 10,658,116 – 10,658,227 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 70.74 |
| Shannon entropy | 0.51501 |
| G+C content | 0.47704 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -16.70 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10658116 111 + 22422827 CCUUUCCGAGCUGUUCGGUAACGUGUCCGUUGUUUGUUUAAUCCGGCUUUUCAGUGGCCGAUCCGACAAGGUGGACUUUA-GUUUACCUGCUUCUCUGACAGUUUG-GCACGG----- ((...(((((((((.((((((((....)))))..((((..(((.((((.......)))))))..))))((((((((....-))))))))......)))))))))))-)...))----- ( -35.60, z-score = -2.06, R) >droSec1.super_15 1356250 111 + 1954846 CCUUUCCGAGCUGUUUGGUAACGUGUCCGUUGUUUGUUUAAUCCGGCUUUUCAUCGGCCAAUCCGCCCAGGUGGACUUUA-GUUUACCUGCUUCUCUGACAGUUUG-GCACGG----- ((...((((((((((.(((....((.(((.((...(((......)))....)).))).))....)))(((((((((....-))))))))).......)))))))))-)...))----- ( -33.70, z-score = -2.10, R) >droYak2.chrX 19227454 111 + 21770863 CCUUUCCGAGCUGUUUGGUAACGUGACCGUUCUACGUUUAAUCCGGCUUUUUAACGGCCAAUCCGUCCAGUUGGACUUUA-GUUUACCUGCUUCUGUGACAGUUUG-GCACGG----- ((...((((((((((.((.((((((.......))))))....))((((.......)))).....((((....))))....-................)))))))))-)...))----- ( -29.20, z-score = -0.89, R) >droEre2.scaffold_4690 14276174 111 - 18748788 CCUUUCCGAGCUGUUUGGUAACGUGUGCGUUUGUCGUUUAAUCCGGCCUAUUAGCGGCCAAUCCGUAUAGGUGGACUUUA-GUUUACCUGCUUCAGUGACAGUUUG-GCACGG----- ((...((((((((((.((((...((((((.(((.....)))...((((.......))))....))))))(((((((....-))))))))))).....)))))))))-)...))----- ( -33.80, z-score = -1.29, R) >droAna3.scaffold_13117 4678107 104 + 5790199 ------ACAACUGUUUUGUAAC--------UUUUGGUUGAAGUAACCGCCUUUAUGGGUAAUGCCAGUGAUCCCAUAUGGUGUUUACCUGAUUCUUUAACUUUCUACGUAUGACCCGU ------......(..(..((..--------....(((((((((((.((((..((((((..((....))...)))))).)))).)))).......))))))).......))..)..).. ( -20.33, z-score = -0.29, R) >consensus CCUUUCCGAGCUGUUUGGUAACGUGUCCGUUGUUCGUUUAAUCCGGCUUUUUAACGGCCAAUCCGACCAGGUGGACUUUA_GUUUACCUGCUUCUCUGACAGUUUG_GCACGG_____ ......(((((((((.((.((((...........))))....))((((.......))))........(((((((((.....))))))))).......)))))))))............ (-16.70 = -17.30 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:11 2011