| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,649,402 – 10,649,493 |
| Length | 91 |
| Max. P | 0.530829 |
| Location | 10,649,402 – 10,649,493 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.81 |
| Shannon entropy | 0.41022 |
| G+C content | 0.39468 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -13.26 |
| Energy contribution | -12.70 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10649402 91 - 22422827 AAUGCUACAGAGACAGAGCGCAUGGAAAGCGCUCUUUU---UCCAAUUCAAAGGGAAAUUGAGCUACACGUUAUAUUUUCCUUUUGCUUUCCCU------ .........((((.(((((((.......))))))).))---)).....((((((((((...(((.....)))....))))))))))........------ ( -26.20, z-score = -2.85, R) >droSim1.chrX_random 2990028 90 - 5698898 AAUGCUACAGAAACGGAGCGCAUGGAAAGCGCUCUUUU---UCCAUUUCAAAGGGAAAUUGAGCUUCACAUUAGGUUUUCCUUUUGCUUUUCC------- .........((((.(((((((.......))))))).))---)).....((((((((....((((((......)))))))))))))).......------- ( -24.80, z-score = -1.84, R) >droSec1.super_15 1347798 90 - 1954846 AAUGCUACAGAAACGGAGCGCAUGGAAAGCGCUCUUUU---UCCAUUUCAAAGGGAAAUUGAGCUUCACAUUAUAUUUUGCUUUUGCUUUCCU------- ...(((.(......).)))....(((((((((((..((---(((.........)))))..))))....((........)).....))))))).------- ( -23.80, z-score = -1.93, R) >droYak2.chrX 19218309 94 - 21770863 AAUGCCACA------AAGUGCACGAAAAGCGUUCUUUUUUUUCCAUUUCAAAGGGAAAUUGGGCUUCAUGUUGUAUUUUUCUUUUUUCCCUUUCUUUCCU ........(------(((((((((..((((.(......((((((........))))))..).))))..)).))))))))..................... ( -13.70, z-score = 0.35, R) >droEre2.scaffold_4690 14267691 89 + 18748788 AAUGUUACA------GAGCGCAUGGAAAGCGCUUUUUUGCCCCCAUUUCAAAGGGAAAUUGAGCUGCACGUUAUAUUUUGUUCGUGUUCUUUCCU----- .((((....------....))))((((((.((((..((...(((........))).))..)))).(((((............))))).)))))).----- ( -19.80, z-score = -0.33, R) >consensus AAUGCUACAGA_AC_GAGCGCAUGGAAAGCGCUCUUUU___UCCAUUUCAAAGGGAAAUUGAGCUUCACGUUAUAUUUUCCUUUUGCUUUUCC_______ ...(((.((.....(((((((.......)))))))......(((........)))....))))).................................... (-13.26 = -12.70 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:09 2011