| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,646,422 – 10,646,474 |
| Length | 52 |
| Max. P | 0.907217 |
| Location | 10,646,422 – 10,646,474 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.42308 |
| Mean single sequence MFE | -12.70 |
| Consensus MFE | -12.70 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10646422 52 - 22422827 GACGCUUCUUUAUGGUAACCAUAAUCAGAGCUUCAGCCGGAUGGGUUAAUAU ((.((((..((((((...))))))...)))).))((((.....))))..... ( -12.70, z-score = -1.58, R) >droEre2.scaffold_4690 14264756 52 + 18748788 GACGCUUCUUUAUGGUAACCAUAAUCAGAGCUUCAGCCGGAUGGGUUAAUAU ((.((((..((((((...))))))...)))).))((((.....))))..... ( -12.70, z-score = -1.58, R) >droYak2.chrX 19215305 52 - 21770863 GACGCUUCUUUAUGGUAACCAUAAUCAGAGCUUCAGCCGGAUGGGUUAAUAU ((.((((..((((((...))))))...)))).))((((.....))))..... ( -12.70, z-score = -1.58, R) >droSec1.super_15 1345011 52 - 1954846 GACGCUUCUUUAUGGUAACCAUAAUCAGAGCUUCAGCCGGAUGGGUUAAUAU ((.((((..((((((...))))))...)))).))((((.....))))..... ( -12.70, z-score = -1.58, R) >droSim1.chrX 8276191 52 - 17042790 GACGCUUCUUUAUGGUAACCAUAAUCAGAGCUUCAGCCGGAUGGGUUAAUAU ((.((((..((((((...))))))...)))).))((((.....))))..... ( -12.70, z-score = -1.58, R) >consensus GACGCUUCUUUAUGGUAACCAUAAUCAGAGCUUCAGCCGGAUGGGUUAAUAU ((.((((..((((((...))))))...)))).))((((.....))))..... (-12.70 = -12.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:08 2011