Locus 14016

Sequence ID dm3.chrX
Location 10,641,230 – 10,641,297
Length 67
Max. P 0.981354
window19279

overview

Window 9

Location 10,641,230 – 10,641,297
Length 67
Sequences 5
Columns 69
Reading direction reverse
Mean pairwise identity 70.01
Shannon entropy 0.52107
G+C content 0.28505
Mean single sequence MFE -11.75
Consensus MFE -5.76
Energy contribution -5.40
Covariance contribution -0.36
Combinations/Pair 1.56
Mean z-score -2.26
Structure conservation index 0.49
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.07
SVM RNA-class probability 0.981354
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10641230 67 - 22422827
UUCAUCGCGACGUAAUUAGCCAUAGAUAAUGGUUAAAAAUAGUUUUGAAAACGUGAGUAUAUCAAAA--
....(((.(((....((((((((.....)))))))).....))).)))..((....)).........-- ( -12.70, z-score =  -1.99, R)
>droSim1.chrX 8270593 55 - 17042790
UUCAUCGCGACAUAAUUAACUAUAGAUAAUGGUUGAUAAUUG-UCUAAAAACUAAA-------------
........((((..(((((((((.....)))))))))...))-))...........------------- ( -10.80, z-score =  -3.31, R)
>droSec1.super_15 1339913 55 - 1954846
UUCAUCGCGACAUAAUUAACUAUAGAUAAUGGUUGAUAAUUG-UCUAAAAACUAAA-------------
........((((..(((((((((.....)))))))))...))-))...........------------- ( -10.80, z-score =  -3.31, R)
>droYak2.chrX 19210062 68 - 21770863
CUAAUCGCGACGUAAUUAGCCAUAGAUAAUGGUUAAUAAUUG-UCUGAAAAGUAAGUUAGAGGACUUAA
....(((.((((..(((((((((.....)))))))))...))-)))))....((((((....)))))). ( -16.80, z-score =  -3.18, R)
>droEre2.scaffold_4690 14259699 68 + 18748788
UUCGUCGCGACGUAAUUGGCCAUAGAUAGUCAUUAAUAAAUG-UAUAAAAAGAAAAUUAUAUGACUGUA
..(((....))).............((((((((((((.....-............)))).)))))))). (  -7.63, z-score =   0.50, R)
>consensus
UUCAUCGCGACGUAAUUAGCCAUAGAUAAUGGUUAAUAAUUG_UCUAAAAACUAAA_UA_A__A_____
..............(((((((((.....)))))))))................................ ( -5.76 =  -5.40 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:04 2011