| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,639,375 – 10,639,491 |
| Length | 116 |
| Max. P | 0.861566 |
| Location | 10,639,375 – 10,639,491 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 85.03 |
| Shannon entropy | 0.25494 |
| G+C content | 0.55639 |
| Mean single sequence MFE | -43.18 |
| Consensus MFE | -33.82 |
| Energy contribution | -33.50 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10639375 116 - 22422827 UGCGCGAAUCGAGUUCGUGAAGUGGUGUGGCCGCCGUGCGGCCGCUUAAAUAUACUCGCUGGACCACC-GGGAAACCCACUAAAUAUUACCACGAUACGCUUUGGCCUUAAUCGCGC .((((((.....(((((((..(((((((((((((...)))))))).........(.....).))))).-((....)).............))))).))((....)).....)))))) ( -42.20, z-score = -1.96, R) >droSim1.chrX 8268737 116 - 17042790 UGCGCGAAUCGAAUUCGUGAAGUGGUGUGGCCGCCGUGCGGGCGCUUAAAUAGCCUCGCUGGACCACC-GGGAAACCCACUAAAUAUUACCACGAUACGCUAUGGCCUUAAUCGCGC .((((((.........(((..(((((((((...(((.(((((.(((.....))))))))))).)))).-((....))...........)))))..)))((....)).....)))))) ( -44.10, z-score = -2.12, R) >droSec1.super_15 1338065 116 - 1954846 UGCGCGAAUUGAAUUCGUGAAGUGGUGUGGCCGCCGUGCGGCCGCUUAAAUAGACUCGCUGGACCACC-GGGAAACCCACUAAAUAUUACCACGAUACGCUAUGGCCUUAAUCGCGC .((((((.((((..(((((..(((((((((((((...)))))))).....(((.....))).))))).-((....)).............)))))...((....)).)))))))))) ( -42.80, z-score = -2.68, R) >droYak2.chrX 19208169 115 - 21770863 UGCCCGAAUCAAAUUCGUGAAGUGGUGUGGCUGCCGUCCGGCCGCUUAAAUAUACCCGCGGGGCCACCGGGAAAAUCUCCUAAAUAUUACCACGAAAAGCGUUCGCGCU--UUGGGC .(((((((.....((((((..((((((((((((.....))))))).........((....))))))).((((.....)))).........))))))..(((....))))--)))))) ( -43.50, z-score = -2.04, R) >droEre2.scaffold_4690 14257844 114 + 18748788 UGGGCGAAUCGAGUUCGUGAAGUGGUGUGGCCGCGGUGCGGUCGCUUAAAUAUACUCGCGGGGGCACC-GGAAUACCCCCUACAUAUUACCACGAAUUGCGUUCGCGCU--UUGGGC .(.(((((.((((((((((..(((((((((((((...))))))))..............(((((....-......))))).....))))))))))))).))))))).).--...... ( -43.30, z-score = -0.64, R) >consensus UGCGCGAAUCGAAUUCGUGAAGUGGUGUGGCCGCCGUGCGGCCGCUUAAAUAUACUCGCUGGACCACC_GGGAAACCCACUAAAUAUUACCACGAUACGCUUUGGCCUUAAUCGCGC .((((((.......(((((..(((((((((((((...)))))))).........((....)))))))..((....)).............)))))...((....)).....)))))) (-33.82 = -33.50 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:03 2011