| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,638,999 – 10,639,112 |
| Length | 113 |
| Max. P | 0.739441 |
| Location | 10,638,999 – 10,639,112 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 71.12 |
| Shannon entropy | 0.56107 |
| G+C content | 0.46645 |
| Mean single sequence MFE | -33.13 |
| Consensus MFE | -15.25 |
| Energy contribution | -15.23 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10638999 113 + 22422827 -GAAAGUUCCUAAAUAAUGCCAUCGAGUACGGUACCGGUAUUUGGUGUAUUACGAAUUCGGUGUGCAGCCACACAGAUGCGAUAUUUAUCGAUAGUCUCGGUGAGCUGUGCACG -.............((((((.((((((((((....).)))))))))))))))((....))(((..(((((((..((((.((((....))))...))))..))).))))..))). ( -38.90, z-score = -2.96, R) >droSim1.chrX 8268371 113 + 17042790 -GAAAGUUCCUAAAUAAUGCCAUAGCGUACGGUACCGGUAUUUGGUGUAUUACGACUUCGGUGUGCAGCCACACUGCUGCGAUAUUUAUCGAUAGUUUUGAUUAGCUGUGCACG -(((.((.((((((((((((....)))).((....)).))))))).)....))...))).(((..((((..((..((((((((....)))).))))..))....))))..))). ( -29.70, z-score = -0.36, R) >droSec1.super_15 1337694 113 + 1954846 -GAAAGUUCCUAAAUAAUGCCAUAGCGUACGGUACCGGUAUUUGGUGUAUUACGACUUCGGUGUGCAGCCACACUGCUGCGAUAUUUAUCGAUAGUUUUGAUGAGCUGUGCACG -(((.((.((((((((((((....)))).((....)).))))))).)....))...))).(((..((((((((..((((((((....)))).))))..)).)).))))..))). ( -32.70, z-score = -1.11, R) >droYak2.chrX 19207770 113 + 21770863 -GAAAGUCCCUAAAUAAUACCAUAAAGUACGGUACCGGUAUUUGGUGUAUUACGGCUGCGGAAUGCAGCCACACUGACGCGAUAUUUAUCGAUACUUUUGGUAUGCGGUGCACG -....(..((......((((((.(((((((((((..((((((..((((.....((((((.....))))))......))))))))))))))).))))))))))))..))..)... ( -34.40, z-score = -1.80, R) >droEre2.scaffold_4690 14257460 112 - 18748788 -GAAAAUCCCUAAAUAAUACCGUAG-GUAUGGUACCGGUAUUUGGUGUAUUACGGCUUCGAAAUGCAGCCAUACUGAUGCCAUAUUUAUCGAACAUUUUGGUGAGCGGUGCACG -................((((((..-((((((((.(((((..(((((((((.((....)).)))))).)))))))).))))))))(((((((.....))))))))))))).... ( -33.80, z-score = -2.06, R) >droAna3.scaffold_13117 4652576 108 + 5790199 GAUAUUUCCCUCCCCAAAACCGCAUUCAGUGCACCCUGUAGCUGGUUUAGGGUUACCCUGUGGCAGCAGCACGCCGGUGCUUGCCUCGAUAGUCGUUCUGUUCGCCUG------ ............(((.(((((((...(((......)))..)).))))).))).........(((.(((((((....)))).)))...(((((.....))))).)))..------ ( -29.30, z-score = -0.18, R) >consensus _GAAAGUCCCUAAAUAAUACCAUAGAGUACGGUACCGGUAUUUGGUGUAUUACGACUUCGGUGUGCAGCCACACUGAUGCGAUAUUUAUCGAUAGUUUUGGUGAGCUGUGCACG ..........................(((((((..((((...((((((((..((....))..)))).)))).)))).........(((((((.....))))))))))))))... (-15.25 = -15.23 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:02 2011