Locus 14013

Sequence ID dm3.chrX
Location 10,638,699 – 10,638,802
Length 103
Max. P 0.626959
window19276

overview

Window 6

Location 10,638,699 – 10,638,802
Length 103
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 95.56
Shannon entropy 0.06122
G+C content 0.36742
Mean single sequence MFE -18.53
Consensus MFE -18.34
Energy contribution -17.90
Covariance contribution -0.44
Combinations/Pair 1.08
Mean z-score -0.93
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.28
SVM RNA-class probability 0.626959
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10638699 103 + 22422827
GAAGAGUAGACGAAAUAAAAAA--CCCGUAUUGCGGAGUCCCGGUGUGUUGUAUGCUUGCUUUUCCGAAGUUGUAUCUCUAUUAUUUUGUGUAAAUAUUUUCUGU
(((((.((.(((((((((...(--((((.....))).))..(((...(..(((....)))..).)))..............))))))))).))....)))))... ( -19.50, z-score =  -1.09, R)
>droSec1.super_15 1337392 105 + 1954846
GAAGAGUAGACGAAAUAAAAAAAACCCGUAUUGCGGAGUCCCGGUGUGUUGUAUGCUUGCCCUUCCGAAGUUGUAUCUCUAUUAUUUUGUGUAAAUAUUUUUUGU
((((((((.(((((((((...........(((.(((((....((((.((.....)).)))).))))).)))..........))))))))).....)))))))).. ( -16.50, z-score =  -0.28, R)
>droSim1.chrX 8268069 105 + 17042790
GAAGAGUAGACGAAAUAAAAAAAACCCGUAUUGCGGAGUCCCGGUGUGUUGUAUGCUUGCCUUUCCGAAUUUGUAUCUCUAUUAUUUUGUGUAAAUAUCUUUUGU
(((((.((.(((((((((........((.(((.(((((....((((.((.....)).)))).)))))))).))........))))))))).))....)))))... ( -19.59, z-score =  -1.41, R)
>consensus
GAAGAGUAGACGAAAUAAAAAAAACCCGUAUUGCGGAGUCCCGGUGUGUUGUAUGCUUGCCUUUCCGAAGUUGUAUCUCUAUUAUUUUGUGUAAAUAUUUUUUGU
(((((.((.(((((((((.......(((.....))).....(((......(((....)))....)))..............))))))))).))....)))))... (-18.34 = -17.90 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:01 2011