| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,612,175 – 10,612,336 |
| Length | 161 |
| Max. P | 0.940419 |
| Location | 10,612,175 – 10,612,336 |
|---|---|
| Length | 161 |
| Sequences | 4 |
| Columns | 161 |
| Reading direction | reverse |
| Mean pairwise identity | 80.62 |
| Shannon entropy | 0.30984 |
| G+C content | 0.45788 |
| Mean single sequence MFE | -32.06 |
| Consensus MFE | -21.00 |
| Energy contribution | -21.75 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.940419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10612175 161 - 22422827 GCAGAGUCAAUAAAAAUUAAAACAUGACCCCCUGCACCCCCUGCACCGCCCCAUCCCCCCAUCAACCCCAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAGGACAGCUGUGGUCAGCAAAAUAGAGAAACAGAUUUUACACUUAUCCCAAAU ((((.((((...............))))...)))).....(((....................((((.(((......))).)))).(((..((((((((((((.............))))))))))))....)))...))).................... ( -33.28, z-score = -2.12, R) >droEre2.scaffold_4690 14231148 132 + 18748788 --AGAGUCAAUAAAAAUUAAAACAUG---------ACCCCCUGCAACAA--CAGCAACCCCCCUCCUCCAUUCGCACAAGUGCUUACUCACAUGCUGGCCACAA-------ACAGUUGUGGUCAGCAGAAUAGAGA---------CAGACUUAUCCCAAGU --.(((((..................---------......(((.....--..))).........(((.(((((((....))).........((((((((((((-------....)))))))))))))))).))).---------..)))))......... ( -36.30, z-score = -4.80, R) >droSec1.super_15 1311364 147 - 1954846 GCAGAGUCAAUAAAAAUUAAAACAUG---------ACCGCCUGCACCGCCCCAUCACCC-----GUCCCAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAAGACAGCUGUGUUCAGCAAAAUAGAGAAAACGAUUUUACACUUAUGCCAAUU (((((((...(((((.........((---------(((((.(((...............-----.........)))...)))))))(((..((((((..((((.............))))..))))))....))).......))))).)))).)))..... ( -27.38, z-score = -0.46, R) >droSim1.chrX 8240171 147 - 17042790 GCAGAGUCAAUAAAAAUUAAAACAUG---------ACCCCCUGCACCGCCCCAUCACCC-----GUCCCAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAAGACAGCUGUGGUCAGCAAAAUAGAGAAAACGAUUUUACACUUAUCCCAAAU ((((.((((...............))---------))...))))..............(-----((.((((........))))...(((..((((((((((((.............))))))))))))....)))...))).................... ( -31.28, z-score = -2.20, R) >consensus GCAGAGUCAAUAAAAAUUAAAACAUG_________ACCCCCUGCACCGCCCCAUCACCC_____GCCCCAUUCGCACAUGUGGUUACUCACUUGCUGGCCACAAACAAAAGACAGCUGUGGUCAGCAAAAUAGAGAAAACGAUUUUACACUUAUCCCAAAU ...((((............................................................((((........))))...(((..((((((((((((.............))))))))))))....))).............))))......... (-21.00 = -21.75 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:01 2011