| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,599,838 – 10,599,901 |
| Length | 63 |
| Max. P | 0.948478 |
| Location | 10,599,838 – 10,599,901 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 65.95 |
| Shannon entropy | 0.57316 |
| G+C content | 0.61248 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -12.04 |
| Energy contribution | -13.04 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10599838 63 + 22422827 CCAUUGGGAUCAGGAUCGGGCACUGGAUCUGGAGC------AGGAUCGGGAGCCGGAUCUGGAACGGGA------ ((....)).((.(((((.(((.((.(((((.....------.))))).)).))).))))).))......------ ( -24.30, z-score = -2.28, R) >droSec1.super_15 1299044 63 + 1954846 CCAUUGGGAGCAGGAUCGGGCACUGGUUCUGGAGC------AGGAUCGGGAGCUGGAUCUGGAACGGGA------ ((..((....))(((((.(((.(((((((((...)------))))))))..))).))))).....))..------ ( -23.80, z-score = -2.42, R) >droYak2.chrX 19166396 75 + 21770863 CCAUUGGGAGCAGGAUCGGGAACUGGAUCUGGAGCUGGAUCGGGAUCGGGAGCGGGAUCUGGAACUGGAGCGGGU ((.(((....)))..((.((..(..(((((.(..((.(((....))).))..).)))))..)..)).))..)).. ( -23.90, z-score = -1.14, R) >droEre2.scaffold_4690 14218844 69 - 18748788 CCAUUGGGCGCGGGAUCGGGCGCUGGAUCUGGUGCAGGAUCGGGAGUGGGAGUGGGAUCUGGAUCGGUA------ ((.....((((.(((((.(....).))))).))))..((((.(((............))).))))))..------ ( -23.30, z-score = -1.10, R) >droWil1.scaffold_180702 3845937 66 + 4511350 ACAUCGGUCACAGGAGCUAACAGUGGCAUCGGAUUGG---UUGGUGCUGGUGUUAUGGGAGGCACUGGA------ ..........(((..(((..(.(((((((((((((..---..))).)))))))))).)..))).)))..------ ( -19.00, z-score = -0.77, R) >consensus CCAUUGGGAGCAGGAUCGGGCACUGGAUCUGGAGC_G____AGGAUCGGGAGCGGGAUCUGGAACGGGA______ ..........(.(((((.(((.((.(((((.(........).))))).)).))).))))).)............. (-12.04 = -13.04 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:00 2011