| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,598,769 – 10,598,842 |
| Length | 73 |
| Max. P | 0.609421 |
| Location | 10,598,769 – 10,598,842 |
|---|---|
| Length | 73 |
| Sequences | 12 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 73.38 |
| Shannon entropy | 0.60507 |
| G+C content | 0.59372 |
| Mean single sequence MFE | -17.01 |
| Consensus MFE | -10.31 |
| Energy contribution | -10.09 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.43 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10598769 73 + 22422827 UUAUCCUUAUUUACUUC-UAGGAGUCUUCCACCGUCCAGACACGGUGCAGAUGACGCCACCUCCGCCCGCUCCG .................-..((.(((.((((((((......))))))..)).))).))................ ( -15.30, z-score = -1.27, R) >droGri2.scaffold_15203 7175003 74 + 11997470 AUUUUGCUACUUACUCCGCAGGUGUUUUCCACCGUCCGGACAUGGCGCAAAUGACCCCGCCGCCGCCAGCGCCG ..............((((..((((.....))))...))))...(((((....(....)((....))..))))). ( -18.90, z-score = -0.09, R) >droMoj3.scaffold_6482 2365754 67 + 2735782 -------AGAAUGCUUCACAGAUGUUUUCCACCGUCCGGACAUGGUGCAGAUGACGCCCCCGCCACCGGCGCCA -------...(((.(((...((((........)))).))))))(((((.(.((.((....)).)).).))))). ( -12.80, z-score = 1.60, R) >droVir3.scaffold_12970 4489944 73 - 11907090 -UUCUCUUUGGCACCUUGCAGGUGUUUUCCACCGGCCGGACAUGGUGCAGAUGACGCCUCCACCGCCAGCGCCG -........(((........((((.....))))(((.((....(((((....).))))....)))))...))). ( -22.70, z-score = -0.32, R) >droWil1.scaffold_180702 3844867 71 + 4511350 -CUCUCUUUGUC--UUUGUAGGCGUCUUCCAUAGGCCGGAUAUGGUGCAGAUGACACCACCGCCGCCAGCACCG -...........--..(((.(((((((.....)))).((...((((((....).)))))...))))).)))... ( -19.40, z-score = -0.45, R) >droPer1.super_21 924824 72 + 1645244 --CUCUUACCUUUUUGUACAGGUGUUUUCCAUCGACCGGACACGGUGCAGAUGACGCCGCCGCCGCCGGCUCCA --..................(((((....((((.((((....))))...)))))))))((((....)))).... ( -20.90, z-score = -0.73, R) >dp4.chrXL_group1e 5966730 72 + 12523060 --CUCUGACCUUUCUGUGCAGGUGUUUUCCAUCGACCGGACACGGUGCAGAUGACGCCGCCGCCGCCGGCCCCA --..................(((((....((((.((((....))))...)))))))))((((....)))).... ( -20.50, z-score = 0.55, R) >droAna3.scaffold_13117 4610112 71 + 5790199 ---AUGUGUGUUUCCAUUUAGGUGUUUUCCAUCGACCGGAUACGGUGCAGAUGACCCCGCCACCGCCAGCCCCG ---.................((((.....((((.((((....))))...))))....))))............. ( -14.20, z-score = 0.58, R) >droEre2.scaffold_4690 14217768 71 - 18748788 --UGCUUUACUUACUUC-UAGGAGUAUUCCACCGUCCAGACACGGUGCAGAUGACGCCACCUCCGCCCGCUCCG --...............-..(((((....((((((......))))))........((.......))..))))). ( -15.20, z-score = -0.72, R) >droYak2.chrX 19165318 73 + 21770863 UACAUUACACUUACUUA-UAGGAGUUUUCCACCGUCCAGACACGGUGCAGAUGACGCCACCUCCGCCCGCACCG .................-..((.(((.((((((((......))))))..)).))).))................ ( -13.60, z-score = -1.18, R) >droSec1.super_15 1297977 71 + 1954846 --UCCCUUAUUUACUUC-CAGGAGUCUUCCACCGUCCAGACACGGUGCAGAUGACGCCACCUCCUCCCGCUCCG --...............-..((.(((.((((((((......))))))..)).))).))................ ( -15.30, z-score = -1.66, R) >droSim1.chrX 8226607 71 + 17042790 --UCCCUUAUUUACUUC-UAGGAGUCUUCCACCGUCCAGACACGGUGCAGAUGACGCCACCUCCUCCCGCUCCG --...............-..((.(((.((((((((......))))))..)).))).))................ ( -15.30, z-score = -1.53, R) >consensus __UCCCUUACUUACUUC_CAGGUGUUUUCCACCGUCCGGACACGGUGCAGAUGACGCCACCGCCGCCCGCUCCG ....................((.(((.(((((((........)))))..)).))).))................ (-10.31 = -10.09 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:59 2011