| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,922,841 – 10,922,895 |
| Length | 54 |
| Max. P | 0.970341 |
| Location | 10,922,841 – 10,922,895 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 97.58 |
| Shannon entropy | 0.03339 |
| G+C content | 0.51829 |
| Mean single sequence MFE | -15.71 |
| Consensus MFE | -14.73 |
| Energy contribution | -15.07 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10922841 54 + 23011544 AC-AAGGAGUAACUUUGGCCACACCCUGUGUGCGCCAACCAUACCCGUAGAUCUU ..-..((.(((...((((((((((...))))).)))))...)))))......... ( -16.90, z-score = -2.97, R) >droSim1.chr2L 10723267 55 + 22036055 ACGAAGGAGUAACUUUGGCCACACCCUGUGUGCGCCAACCAUACCCGUAGAUCUU .....((.(((...((((((((((...))))).)))))...)))))......... ( -16.90, z-score = -2.88, R) >droSec1.super_3 6333871 55 + 7220098 ACGAAGGAGUAACUUUGGCCACACCCUGUGUGCGCCAACCAUAACCGUAGAUCUU .....((.......((((((((((...))))).)))))......))......... ( -13.32, z-score = -1.39, R) >consensus ACGAAGGAGUAACUUUGGCCACACCCUGUGUGCGCCAACCAUACCCGUAGAUCUU .....((.(((...((((((((((...))))).)))))...)))))......... (-14.73 = -15.07 + 0.33)
| Location | 10,922,841 – 10,922,895 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 97.58 |
| Shannon entropy | 0.03339 |
| G+C content | 0.51829 |
| Mean single sequence MFE | -17.37 |
| Consensus MFE | -16.93 |
| Energy contribution | -17.27 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10922841 54 - 23011544 AAGAUCUACGGGUAUGGUUGGCGCACACAGGGUGUGGCCAAAGUUACUCCUU-GU .........(((((...(((((.(((((...))))))))))...)))))...-.. ( -18.70, z-score = -1.81, R) >droSim1.chr2L 10723267 55 - 22036055 AAGAUCUACGGGUAUGGUUGGCGCACACAGGGUGUGGCCAAAGUUACUCCUUCGU .........(((((...(((((.(((((...))))))))))...)))))...... ( -18.70, z-score = -1.86, R) >droSec1.super_3 6333871 55 - 7220098 AAGAUCUACGGUUAUGGUUGGCGCACACAGGGUGUGGCCAAAGUUACUCCUUCGU .........((......(((((.(((((...)))))))))).......))..... ( -14.72, z-score = -0.59, R) >consensus AAGAUCUACGGGUAUGGUUGGCGCACACAGGGUGUGGCCAAAGUUACUCCUUCGU .........(((((...(((((.(((((...))))))))))...)))))...... (-16.93 = -17.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:12 2011