| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,575,837 – 10,575,954 |
| Length | 117 |
| Max. P | 0.906551 |
| Location | 10,575,837 – 10,575,954 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.16 |
| Shannon entropy | 0.39266 |
| G+C content | 0.40284 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -18.71 |
| Energy contribution | -19.99 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10575837 117 - 22422827 UGAAAUAUGAAAACCCUACCAACGGGGGUGCAUUCGGGGGGUGAAAGCAUUCUAUUAUCCUC-GAGGCAUUCUGAAGGAAUCGGUUUUUCAGUAC--UAAUCAUUGAAUGAGUUUACAUA .....((((...(((((.......))))).((((((((((((((.((....)).))))))))-((......((((((((.....))))))))...--...))..))))))......)))) ( -29.00, z-score = -0.50, R) >droEre2.scaffold_4690 14199761 114 + 18748788 UCAAAUAUGAAAACUCCACAAAC-GGGGUGCUUACU-AUGGUGAAAGCAGGCUUUUAUCCUC-GGGGCAUUCUUGAGGAAUCGGUAUGCGAGUAC--GAAUCCUUGAAGGAGUUUUCAU- ......(((((((((((......-.((((((((...-..((((((((....))))))))...-.))))))))(..((((.(((.(((....))))--)).))))..).)))))))))))- ( -41.90, z-score = -4.39, R) >droYak2.chrX 19146064 99 - 21770863 -------UAAAA----UAUGAGUGGGGGUGCAUUCU-GGGGUGAAAGCAUGCUUUUUUCCCCAGAAGCAUUCUUAAGGAAUCGGUGUUUUAGUAG--AAAUCAUUAAAAGAGA------- -------(((((----(((((.(((((((((.((((-((((.(((((....)))))..))))))))))))))))).....)).))))))))....--................------- ( -33.10, z-score = -4.09, R) >droSec1.super_15 1279825 119 - 1954846 UGAAAUAUGAAAACCCUACCAACGGGGGUGCAUUCUGGGGGUGAAAGCAUUCUAUUAUCCUC-GAGGCAUUCUUAAGGAAUCGGUUUUUCAGUACUCUAAUCGUUGAAUGAGUUUAUAUA .......((((((.((..((...((((((((.(((.((((((((.((....)).))))))))-)))))))))))..))....)).))))))..((((............))))....... ( -27.90, z-score = -0.24, R) >droSim1.chrX 8207627 119 - 17042790 UGAAAUAUGAAAACCCUACCAACGGGGGUGCAUUCUGGGGGUGAAAGCAUUCUAUUAUCCUC-GAGGCAUUCUUAAGGUAUCGGUUUUUCAGUACUCUAAUCAUUGAAUGAGUUUAUAUA .......((((((((.((((...((((((((.(((.((((((((.((....)).))))))))-)))))))))))..))))..)).))))))..((((............))))....... ( -31.20, z-score = -1.38, R) >consensus UGAAAUAUGAAAACCCUACCAACGGGGGUGCAUUCUGGGGGUGAAAGCAUUCUAUUAUCCUC_GAGGCAUUCUUAAGGAAUCGGUUUUUCAGUAC__UAAUCAUUGAAUGAGUUUACAUA ........(((((((.........(((((((.(((.((((((((.((....)).)))))))).)))))))))).........)))))))............................... (-18.71 = -19.99 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:57 2011