Locus 14006

Sequence ID	dm3.chrX
Location	10,567,429 – 10,567,489
Length	60
Max. P	0.954994

overview

Window 8

Location	10,567,429 – 10,567,489
Length	60
Sequences	5
Columns	67
Reading direction	reverse
Mean pairwise identity	63.28
Shannon entropy	0.60998
G+C content	0.32191
Mean single sequence MFE	-7.20
Consensus MFE	-4.70
Energy contribution	-4.38
Covariance contribution	-0.32
Combinations/Pair	1.33
Mean z-score	-1.00
Structure conservation index	0.65
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.61
SVM RNA-class probability	0.954994
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10567429 60 - 22422827
UUCCGAAAGGACCUAAACAAAGUUC-------AAAAUUAUACGUAUUUUCCUUGCUAAAAUUUUGUU
.(((....))).............(-------((((((.((.(((.......))))).))))))).. (  -9.60, z-score =  -2.09, R)
>droSim1.chrX 8199438 57 - 17042790
UUCCGAAAGGAUCUAAACGAAGCCC-------AAAAUUAUACGUAUUUUCCUUGCUAAAAUUUG---
.(((....))).........(((..-------(((((.......)))))....)))........--- (  -6.60, z-score =  -0.92, R)
>droSec1.super_15 1271804 57 - 1954846
UUCCGAAAGGAUCUAAACGAAGCCC-------AAAAUUAUACGUAUUUUCCUUGCUAAAAUUUG---
.(((....))).........(((..-------(((((.......)))))....)))........--- (  -6.60, z-score =  -0.92, R)
>droEre2.scaffold_4690 14191744 64 + 18748788
AUCCGAAAGGAACUACACUUAGCCCAAAUUCAAAAGUAAUAUACAUUUCUGUGGCAAAAACUUC---
.(((....)))..........(((((.......................)).))).........--- (  -9.20, z-score =  -1.48, R)
>droAna3.scaffold_13117 1206849 57 + 5790199
UUCUCUAAAGACUAAAAUCCCAGUC-------ACAUCUUGUUGUAGUAUCCUUUGAAGUAUUUU---
(((......((((........))))-------(((......)))..........))).......--- (  -4.00, z-score =   0.41, R)
>consensus
UUCCGAAAGGACCUAAACGAAGCCC_______AAAAUUAUACGUAUUUUCCUUGCUAAAAUUUG___
.(((....)))........................................................ ( -4.70 =  -4.38 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:55 2011