| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,558,539 – 10,558,610 |
| Length | 71 |
| Max. P | 0.529961 |
| Location | 10,558,539 – 10,558,610 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 84.38 |
| Shannon entropy | 0.27614 |
| G+C content | 0.34895 |
| Mean single sequence MFE | -13.94 |
| Consensus MFE | -9.08 |
| Energy contribution | -10.68 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10558539 71 - 22422827 CAAGUGGGUUCUUGAAACAGUUAAACUGCUGAAUUAGUGACUCACAACAAUUACUCGUAAAUAUAAACGAU ...(((((((.((((..((((......))))..)))).))))))).........((((........)))). ( -16.60, z-score = -2.88, R) >droEre2.scaffold_4690 14181568 65 + 18748788 CAAUUGGGCCCUUUAAAGAGCUAAAUUGCUGAAUUAGUAACUGACUGCAAU------UAAAUAUAAACUAU ......(((.((....)).))).((((((....((((...))))..)))))------)............. ( -7.20, z-score = 0.24, R) >droYak2.chrX 19128009 65 - 21770863 CAAUUGGGUCCUUGUAACAGCUAAAUUGCUGAAUUAGUAACUCGCUGCAAU------UAAAUAUAAACGAU .....((((..(((...((((......))))...)))..))))........------.............. ( -9.30, z-score = -0.35, R) >droSec1.super_15 1262764 71 - 1954846 CAAGUGGGUCCUUGAAACAGCUAAAUUGCUGAAUUAGUGACUCACGGCAAUUACCUGUAAAUAUAAACGAU ...(((((((.((((..((((......))))..)))).)))))))((......))................ ( -18.80, z-score = -3.18, R) >droSim1.chrX 8190171 71 - 17042790 CAAGUGGAUCCUUGAAACAGCUAAAUUGCUGAAUUAGUGACUCACGGCAAUUGCCUGUAAAUAUAAACGAU ...(((..((.((((..((((......))))..)))).))..)))(((....)))................ ( -17.80, z-score = -2.96, R) >consensus CAAGUGGGUCCUUGAAACAGCUAAAUUGCUGAAUUAGUGACUCACGGCAAUU_C__GUAAAUAUAAACGAU ...(((((((.((((..((((......))))..)))).))))))).......................... ( -9.08 = -10.68 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:54 2011