| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,548,577 – 10,548,679 |
| Length | 102 |
| Max. P | 0.531362 |
| Location | 10,548,577 – 10,548,679 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 81.16 |
| Shannon entropy | 0.34530 |
| G+C content | 0.53525 |
| Mean single sequence MFE | -25.51 |
| Consensus MFE | -14.44 |
| Energy contribution | -15.05 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10548577 102 - 22422827 ACCUUCGA--CCUCCCGAACCACCGAAACCUCCGGUAACCAUAAAGAUUAAUACCGUAGACCCACCGCUCCAUCCGGAGCGAUAACAGUUGUGAGGUCAUUGCA ......((--((((.(((...........((.(((((..............))))).))......((((((....)))))).......))).))))))...... ( -28.44, z-score = -3.56, R) >droPer1.super_21 879809 102 - 1645244 ACUUCCAC--CUCACCGGGACACCAUCGCUACUUUUGGCCAUAAAGAUUAAUACCGGGGGCCCCGCCGACCAUCCGGAGCGAUAGCAGCUCUGAGGUCAUUGCA ......((--((((..(((...(.((((((.((((.......)))).......((((((((......).)).))))))))))).)...)))))))))....... ( -26.90, z-score = 0.43, R) >dp4.chrXL_group1e 5921974 102 - 12523060 ACUUCCAC--CUCACCGGGACACCAUCGCUACUUUUGGCCAUAAAGAUUAAUACCGGGGGCCCCGCCGACCAUCCGGAGCGAUAGCAGCUCUGAGGUCAUUGCA ......((--((((..(((...(.((((((.((((.......)))).......((((((((......).)).))))))))))).)...)))))))))....... ( -26.90, z-score = 0.43, R) >droEre2.scaffold_4690 14172131 98 + 18748788 ACCUU-AG--UCCCCCGAAA--CC-AAACCUCCGGUAACCAUAAAGAUUAAUACCGUAGACCCACCGCUCCUUCCGGAGCGAUAACAGUUGUGAGGUCAUUGCA ...((-((--((.......(--((-........))).........))))))....((((((((((((((((....)))))).........))).))))..))). ( -21.99, z-score = -1.95, R) >droYak2.chrX 19119212 100 - 21770863 ACCUUUGA--CCCCCCGAAC--CCGGAACCUCCGGUAACCAUAAAGAUUAAUACCGUAGACCCGCCGCUCCAUACGGAGCGAUAACAGUUGUGAGGUCAUUGCA ..(..(((--((.(.(((..--.(((...((.(((((..............))))).))..))).((((((....)))))).......))).).)))))..).. ( -27.04, z-score = -2.62, R) >droSec1.super_15 1252494 99 - 1954846 ACCUUCGA--CCCCCCGAAC--CC-AAACCUCCGGUAACCAUAAAGAUUAAUACCGUAGACCCACCGCUCCAUCCGGAGCGAUAACAGUUGUGAGGUCAUUGCA ...((((.--.....)))).--..-.......(((((..............)))))..(((((((((((((....)))))).........))).))))...... ( -23.74, z-score = -2.64, R) >droSim1.chrX 8177086 101 - 17042790 ACCUUCGACCCCCCCCGAAC--CC-AAACCUCCGGUAACCAUAAAGAUUAAUACCGUAGACCCACCGCUCCAUCCGGAGCGAUAACAGUUGUGAGGUCAUUGCA ...((((........)))).--..-.......(((((..............)))))..(((((((((((((....)))))).........))).))))...... ( -23.54, z-score = -2.67, R) >consensus ACCUUCGA__CCCCCCGAAC__CC_AAACCUCCGGUAACCAUAAAGAUUAAUACCGUAGACCCACCGCUCCAUCCGGAGCGAUAACAGUUGUGAGGUCAUUGCA ................................(((((..............)))))..(((((((((((((....)))))).........))).))))...... (-14.44 = -15.05 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:53 2011