| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,541,327 – 10,541,381 |
| Length | 54 |
| Max. P | 0.978256 |
| Location | 10,541,327 – 10,541,381 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 73.75 |
| Shannon entropy | 0.51927 |
| G+C content | 0.52526 |
| Mean single sequence MFE | -14.26 |
| Consensus MFE | -9.50 |
| Energy contribution | -8.63 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10541327 54 + 22422827 CGGGUAACCUCCUGAC--ACAUUGGCCUUCAAGGCUG--ACUUUUCUACUUGCCCGUC (((((((......((.--...(..(((.....)))..--)....))...))))))).. ( -15.10, z-score = -2.06, R) >droPer1.super_21 871160 54 + 1645244 CGGGUAUCGUAUUGUCGGACAUUCGACUACUUAUUGCC--UUUCUUCUGGCCCUUG-- .((.....(((..(((((....)))))))).....(((--........)))))...-- ( -10.60, z-score = -0.93, R) >droAna3.scaffold_13117 4554826 53 + 5790199 CAGGUAACCUCCUGAC--ACAUUGGCCUUCGAGGCUC---CUGUUGUCACUCUCUGAC .(((......)))(((--(((..((((.....)))).---.)).)))).......... ( -13.60, z-score = -0.83, R) >droEre2.scaffold_4690 14165005 54 - 18748788 CGGGUAACCUUCUGAC--ACAUUGGCCUUCAAGGCUG--ACUUUUCUGCUUGCCCGUC (((((((.(....((.--...(..(((.....)))..--)....)).).))))))).. ( -16.00, z-score = -2.10, R) >droYak2.chrX 19110858 54 + 21770863 CGGGUAACCUCCUGAC--ACAUUGGCCUUCAAGGCUG--ACUUUUCUGCUUGCCCGUC (((((((.(....((.--...(..(((.....)))..--)....)).).))))))).. ( -16.00, z-score = -1.91, R) >droSec1.super_15 1245428 56 + 1954846 CGGGUAACCUCCUGAC--ACAUUGGCCUUCAAGGUUGUCAUUUGUACACUUACCCGUC (((((((.....((((--(.....(((.....)))))))).........))))))).. ( -13.44, z-score = -0.84, R) >droSim1.chrX 8170012 54 + 17042790 CGGGUAACCUCCUGAC--ACAUUGGCCUUCAAGGCUG--ACUUUUCUACUUACCCGUC (((((((......((.--...(..(((.....)))..--)....))...))))))).. ( -15.10, z-score = -2.51, R) >consensus CGGGUAACCUCCUGAC__ACAUUGGCCUUCAAGGCUG__ACUUUUCUACUUGCCCGUC (((((((.....((.....))..((((.....)))).............))))))).. ( -9.50 = -8.63 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:52 2011