| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,534,386 – 10,534,501 |
| Length | 115 |
| Max. P | 0.827919 |
| Location | 10,534,386 – 10,534,501 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 88.50 |
| Shannon entropy | 0.20653 |
| G+C content | 0.45210 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -20.96 |
| Energy contribution | -21.60 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10534386 115 - 22422827 UGAUCGAUGUGAAAAGCUAACGCCGUACCGCAUCUCUGCUCUCGAAUGCGAAUUUUACCCGCGUUUGCGAAAUAAAUCGAUUAAACCGUCUUAUAUUUUCCAUAUCCA-CAACACC (((((((((((....((....)).....)))))).....((.((((((((.........)))))))).))........))))).........................-....... ( -22.90, z-score = -2.01, R) >droSim1.chrX 8162264 116 - 17042790 UGAUCGAUGUGAAAAGCGAACGCCGAACCGCAUCUCUGCUCUCGAAUGCGAAUUUUACCCGCGUUUGCGAAAUAAAUCGAUUAAACCGUCUUAUAUUUCCCAUAUCCAGCAACACC ((...((((((....((((((((......(((....)))..(((....))).........))))))))((((((....(((......)))...)))))).))))))...))..... ( -25.10, z-score = -1.90, R) >droSec1.super_15 1237922 111 - 1954846 UGAUCGAUGUGAAAAGCGAACGCCGAACCGC-UCUCUGCUCUCGAAUGCGAAUUUUACCCGCGUUUGCGGAAUAAAUCGAUUAAACCGUCUUAUAUUUCGCAUACCCA-CACC--- ((((((((.......((((((((......((-.....))..(((....))).........)))))))).......)))))))).........................-....--- ( -24.34, z-score = -1.17, R) >droYak2.chrX 19103793 115 - 21770863 UGAUUGAUGUGAAAAGCGAACGCCGCACUGCAUCUCUGCUAUCGGAUGCGAAUUUAACCCGCGUUUGCAGAAUAAAUCGAUUAAACCAUCUUAUAUGCCCCAUAUCCC-CACCACA ((((((((.......((((((((......((((((........))))))(.........))))))))).......)))))))).........................-....... ( -23.34, z-score = -1.40, R) >droEre2.scaffold_4690 14157308 116 + 18748788 UGAUCGAUGUGAAUAGCGUACGCCGCACCACAUCUCUGCUAUCGAAUGCGAAUUUUACCCGCGUUUGCGGAAUAAAUCGAUUAAGCCGUCUUAUAUUUCCCAUACCCUAUCCCACC (((((((((((....(((.....)))..))))))(((((....(((((((.........)))))))))))).......)))))................................. ( -24.60, z-score = -1.55, R) >consensus UGAUCGAUGUGAAAAGCGAACGCCGAACCGCAUCUCUGCUCUCGAAUGCGAAUUUUACCCGCGUUUGCGGAAUAAAUCGAUUAAACCGUCUUAUAUUUCCCAUAUCCA_CACCACC ((((((((.......((((((((......(((....)))..(((....))).........)))))))).......))))))))................................. (-20.96 = -21.60 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:47 2011