| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,523,161 – 10,523,257 |
| Length | 96 |
| Max. P | 0.893484 |
| Location | 10,523,161 – 10,523,257 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 68.79 |
| Shannon entropy | 0.55899 |
| G+C content | 0.42984 |
| Mean single sequence MFE | -25.70 |
| Consensus MFE | -9.97 |
| Energy contribution | -9.94 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10523161 96 - 22422827 CCGUUACGCGCUGUUAACGCAACAGCGGGAUG-----------AUGUUAAGGUUAACCCU-UAAC-UGCACUACAUCCGUGACAUCUGCUUUACUUAAUAUCAUUGAUU- ..(((((.(((((((.....)))))))(((((-----------..(((((((.....)))-))))-.......))))))))))..........................- ( -27.90, z-score = -3.45, R) >droEre2.scaffold_4690 14145997 108 + 18748788 CCGUUACGUGCUGUUAACGCAACAGCGGGAUUAAACAGCGGCUAUGUUAAGGUUAACCCU-UAACAUGCACUUCAUCCGGGACAUCUGCAAUAUUUAAUAGUUUUGAUU- ..((..(((((((((..(((....)))......)))))))((.(((((((((.....)))-))))))))........))..))..........................- ( -26.90, z-score = -1.27, R) >droYak2.chrX 19092190 107 - 21770863 CCGUUACGCGCUGUUAACGCAACAGCAGGAUGAACCAGCGGCUAUGUUAAGGUUAACCCU-UAAC-UGCACUUUAUCUGUGACAUCUGCAAUAUUUAAUAUCACUGAUU- ..(((((..((((((.....)))))).(((((((......((...(((((((.....)))-))))-.))..))))))))))))..........................- ( -26.80, z-score = -1.78, R) >droSim1.chrX 8151109 94 - 17042790 CCGUUA-GCGCUGUUAACACAACAGCGGGAUG-----------AUGUUAAGGUUAACCCU-UAAC-UGCACUGCAUCCGUGACAUCUGCUACACUC-AUAUCUCUAAUU- ..((((-((((((((.....)))))).(((((-----------..(((((((.....)))-))))-..(((.......))).))))))))).))..-............- ( -25.80, z-score = -2.80, R) >droSec1.super_15 1226808 95 - 1954846 CCGUUA-GCGCUGUUAACACAACAGCGGGAUG-----------AUGUUAAGGUUAACCCU-UAAC-UGCACUACAUCCGUGACAUCUGCUACACUC-AGAUCUCUGGAUU ..((((-((((((((.....)))))).(((((-----------..(((((((.....)))-))))-..(((.......))).))))))))).))((-((....))))... ( -28.40, z-score = -2.92, R) >droWil1.scaffold_181130 16076420 84 - 16660200 ACGUUUCACGCU-UCGCAGCACGCGCGUGCUA-----------AUUGUAUGUUAAAUGCUGCAGUUUGUCUUGUGUUUUUUUCAUCUGUAUUAGUU-------------- (((...((.(((-..((((((...((((((..-----------...))))))....))))))))).))...)))......................-------------- ( -18.40, z-score = -0.16, R) >consensus CCGUUACGCGCUGUUAACGCAACAGCGGGAUG___________AUGUUAAGGUUAACCCU_UAAC_UGCACUACAUCCGUGACAUCUGCAAUACUU_AUAUCUCUGAUU_ .......((((((((.....)))))).(((((.................(((.....))).............))))).........))..................... ( -9.97 = -9.94 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:46 2011