| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,899,399 – 10,899,506 |
| Length | 107 |
| Max. P | 0.696899 |
| Location | 10,899,399 – 10,899,506 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 58.14 |
| Shannon entropy | 0.68047 |
| G+C content | 0.41955 |
| Mean single sequence MFE | -30.48 |
| Consensus MFE | -10.72 |
| Energy contribution | -12.29 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.696899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10899399 107 - 23011544 AAGGCUCACCUGUAUGUGAAUGUGU-------GUGUGUGUGUUGGCCCAAAGUGAGCACUGUCCUGUGUGUCGCAUCGCAUGCCAUUUGCAUAAGUAAAAUAUACACAAAAAUC .(((....))).((((..((((.((-------(((((.((((.(((.((.((.((......)))).)).))))))))))))))))))..)))).(((.....)))......... ( -27.60, z-score = -0.53, R) >droSec1.super_3 6308494 109 - 7220098 AAGGCUCACGUGUAUGUGUACGUGUGAGUGUGGUGUGUGUGUUGGCCCAAAGUGAGCACUGUCCUGUGAG-----UCGCAUGCCAUUUGCAUAAGUAAAAUAUACACAAAAAUC .(.(((((((((((....))))))))))).)..(((((((((((((.....((((.(((......)))..-----))))..))))(((((....))))))))))))))...... ( -34.20, z-score = -2.00, R) >droAna3.scaffold_12916 14756128 105 - 16180835 AAUGCAGGUGUAUCCGUGUG-GCAUGCGACUAAAGUAGAGUUUAG--UAAAGUGAACACUGCGACGUGAG------CAUGGGGCAUUUGCAUAAGUAAAAUACACACGAUUAUA .((((((((((.(((((((.-.((((((((((((......)))))--)..(((....))).)).)))).)------))))))))))))))))...................... ( -30.80, z-score = -2.00, R) >droVir3.scaffold_13246 1220815 108 - 2672878 --UGUAUGUGAGAUUGUGUGUGUGUGUG---GGUGUAAAUGUGUGCUUCUGUUUAACGGU-UAAUGCACAUAGCAACAUUUCGCAUUUGCAUAAGUAAAGCAAACUAAAUACUC --.((.(((....(((((((.(((((.(---(((((...(((((((..(((.....))).-....)))))))...))))))))))).))))))).....))).))......... ( -29.30, z-score = -1.23, R) >consensus AAGGCACACGUGUAUGUGUAUGUGUG_G___GGUGUAUAUGUUGGCCCAAAGUGAACACUGUCAUGUGAG_____UCACAUGCCAUUUGCAUAAGUAAAAUAUACACAAAAAUC ..............(((((((((.........(((((((((((.............(((......))).............))))))))))).......)))))))))...... (-10.72 = -12.29 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:11 2011