| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,495,795 – 10,495,885 |
| Length | 90 |
| Max. P | 0.990372 |
| Location | 10,495,795 – 10,495,885 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.18 |
| Shannon entropy | 0.30546 |
| G+C content | 0.45515 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -18.16 |
| Energy contribution | -18.96 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10495795 90 - 22422827 UAUGAGUGAUUUCAAUUCCACCAC-----CAAUAUUUUUGGCGUGGAAUUGGGAACACUCCCCUAAUGCGAUAUAUAAACGAAAGCUGACAACCC ...(((((.(..(((((((((..(-----(((.....)))).)))))))))..).)))))...................(....).......... ( -27.10, z-score = -4.48, R) >droSim1.chrX 8140754 86 - 17042790 UAUGAGUGAUUUCAAUUCCACCAC---------ACUUUUGGCGUGGAAUUGGGAACACUCCCCUCAUGCGAUGUGUAAACGAAAGCUGACAACCC ...(((((.(..(((((((((..(---------(....))..)))))))))..).)))))...(((.((..(((....)))...)))))...... ( -26.80, z-score = -3.22, R) >droSec1.super_15 1200059 86 - 1954846 UAUGAGUGAUUUCAAUUCCACCAC---------ACUUUUGGCGUGGAAUUGGGAACACUCCCCUCAUGCGAUGUGUAAACGAAAGCUGACAACCC ...(((((.(..(((((((((..(---------(....))..)))))))))..).)))))...(((.((..(((....)))...)))))...... ( -26.80, z-score = -3.22, R) >droYak2.chrX 19064720 91 - 21770863 --UUAGUGAUUUCAAUUCCACCAUACC-ACACUGU-UAAAUUGUGGAAUUGGGAACACUCCCCCCAUGCGAUGUGUAAGCAAACGCUGACAACCC --..((((.(..(((((((((.((...-.......-...)).)))))))))..).))))..............(((.(((....))).))).... ( -21.82, z-score = -1.80, R) >droEre2.scaffold_4690 14114852 93 + 18748788 --UUAGUGAUUUCAAUUCCACCACACCAACACCACAUUCGAUGUGGAAUCGGGAACACUCCCCACAUGCGAUGUGUAACCAAACGCUGACAACCC --((((((.......................((((((...))))))....((..(((((((......).)).))))..))...))))))...... ( -18.80, z-score = -0.78, R) >consensus UAUGAGUGAUUUCAAUUCCACCAC_____CA__ACUUUUGGCGUGGAAUUGGGAACACUCCCCUCAUGCGAUGUGUAAACGAAAGCUGACAACCC ...(((((.(..(((((((((.....................)))))))))..).))))).............(((...(....)...))).... (-18.16 = -18.96 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:45 2011