| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,480,882 – 10,480,983 |
| Length | 101 |
| Max. P | 0.627531 |
| Location | 10,480,882 – 10,480,983 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 83.24 |
| Shannon entropy | 0.27519 |
| G+C content | 0.40378 |
| Mean single sequence MFE | -21.46 |
| Consensus MFE | -17.14 |
| Energy contribution | -18.46 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10480882 101 - 22422827 AAAAAUCAGAAAUCAGAAGCUUCUUUCCAAUUCCAGAAGUCAAAACGC-------------UAAUCGGUAAUCGACAAUUGCUUAUCGGUCAUCGACAGUUUUCGCGUUUUCAA- ..................((((((..........)))))).(((((((-------------...(((((.(((((.((....)).))))).)))))..(....))))))))...- ( -16.70, z-score = -0.62, R) >droSim1.chrX 8131344 107 - 17042790 -------CAAAAUCAGAAGCUUCUUUCCAAUUCGAGAAGUCAAAACGCAGUGUACGUUCGCUAAUCGGUAAUCGACAAGUGCUUAUCGGUCAUCGACAGUUUUCGCGUUUUCAA- -------...........(((((((........))))))).(((((((((((......))))..(((((.(((((.((....)).))))).)))))........)))))))...- ( -25.10, z-score = -1.71, R) >droSec1.super_15 1184541 107 - 1954846 -------CAAAAUCAGAAGCUUCUUUCCAAUUCUAGAAGUCAAAACGCAGUGUACGUUCGCUAAUCGGUAAUCGACAAGUGCUUAUCGGUCAUCGACAGUUUUCGCGUUUUCAA- -------...........((((((..........)))))).(((((((((((......))))..(((((.(((((.((....)).))))).)))))........)))))))...- ( -23.60, z-score = -1.81, R) >droYak2.chrX 19049608 107 - 21770863 -------CAAAAUCAGAAGCUUCUUUCCAAUUCAAGAAAUCAAAAUGCAGUGUACGUUCGCUAAUCGGUAAUCGACAUUUGUUUAUCGGUCAUCGACGGUUUACGCGUUUUCAC- -------.............(((((........)))))...(((((((.(((..(((.((...((((((((.(((...))).))))))))...)))))...))))))))))...- ( -19.40, z-score = -0.44, R) >droEre2.scaffold_4690 14099335 98 + 18748788 -------CAAAAUCAGAAGCUUCUUUCCAAUGCAAGAAGUCAAAAUGCA----------GCCAAUCGGUAAUCGACAAUUCUUUAUCGGUCAUCGACGGUUUUCGCAUUUUCGCG -------...........(((((((........))))))).((((((((----------(((..(((((.(((((.((....)).))))).))))).))))...))))))).... ( -22.50, z-score = -2.21, R) >consensus _______CAAAAUCAGAAGCUUCUUUCCAAUUCAAGAAGUCAAAACGCAGUGUACGUUCGCUAAUCGGUAAUCGACAAUUGCUUAUCGGUCAUCGACAGUUUUCGCGUUUUCAA_ ..................(((((((........))))))).(((((((((((......))))..(((((.(((((.((....)).))))).)))))........))))))).... (-17.14 = -18.46 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:43 2011