| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,473,752 – 10,473,843 |
| Length | 91 |
| Max. P | 0.936074 |
| Location | 10,473,752 – 10,473,843 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 83.98 |
| Shannon entropy | 0.26010 |
| G+C content | 0.38617 |
| Mean single sequence MFE | -20.62 |
| Consensus MFE | -17.98 |
| Energy contribution | -17.42 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10473752 91 + 22422827 -----------------CCAUUGCUUUUUUUUAUGGGGUAUACCCC--AUCUCCAAAUCACAAUAGCUUUAAGUGCAUACAAAAUGAGCGUGUCGUCUUCAAGCUGUUUA -----------------...............((((((....))))--))...........((((((((.(((((.((((.........)))))).))).)))))))).. ( -20.60, z-score = -2.15, R) >droSim1.chrX 8124951 90 + 17042790 -----------------CCAUUGCUUUUUUU-AUGGGGUAUACCCC--AUCUCCAAAUCACAAUAGCUUUAAGUGCAUACAAAAUGAGCGUGUCGUCUUCAAGCUGUUUA -----------------..............-((((((....))))--))...........((((((((.(((((.((((.........)))))).))).)))))))).. ( -20.60, z-score = -2.14, R) >droSec1.super_15 1177543 91 + 1954846 -----------------CCAUUGCUUUUUUUUAUGGGGUAUACCCC--AUCUCCAAAUCACAAUAGCUUUAAGUGCAUACAAAAUGAGCGUGUCGUCUUCAAGCUGUUUA -----------------...............((((((....))))--))...........((((((((.(((((.((((.........)))))).))).)))))))).. ( -20.60, z-score = -2.15, R) >droYak2.chrX 19041977 110 + 21770863 UCACAGCUUUUUUUUUGGUUUUUUUGUUUUUUAUGGGGCAUACCCCCCAACUCCAAAUCACAAUAGCUUUAAGUGCAUACAAAAUGAGCGUAUCGUCUUUGAGCUGUUUA ..(((((((......((((...((..((((.(((((((......)))).................((.......))))).))))..))...)))).....)))))))... ( -22.30, z-score = -1.07, R) >droEre2.scaffold_4690 14091811 88 - 18748788 --------------------UCACCGCUUUUUAUGGGGUAUACCCC--AACUCCAAAUCACAAUGGCUUUAAGUGCAUACAAAAUGAGCGUAUCGUCUUCAAGCUGUUUA --------------------.............(((((....))))--)............((((((((.(((((.((((.........)))))).))).)))))))).. ( -19.00, z-score = -1.38, R) >consensus _________________CCAUUGCUUUUUUUUAUGGGGUAUACCCC__AUCUCCAAAUCACAAUAGCUUUAAGUGCAUACAAAAUGAGCGUGUCGUCUUCAAGCUGUUUA ..................................((((....))))...............((((((((.(((((.((((.........)))))).))).)))))))).. (-17.98 = -17.42 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:42 2011