| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,452,630 – 10,452,703 |
| Length | 73 |
| Max. P | 0.870025 |
| Location | 10,452,630 – 10,452,703 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 89.65 |
| Shannon entropy | 0.17736 |
| G+C content | 0.43552 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -14.04 |
| Energy contribution | -15.12 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10452630 73 - 22422827 GAAAUGGAAAAAAAAAACUAGCGAAAACUCGCAAAGGUUUUUCCAUAAACGGUGGAUUGUGCUAGUCGCCGGA ...(((((((((.....((.((((....))))..)).)))))))))...(((((..(......)..))))).. ( -19.40, z-score = -2.25, R) >droSim1.chrX 8103072 69 - 17042790 GAAAUGGAAA----AAACUAGCGAAAACUCGCAAAGGUUUUUCCAUAAACGGUGCAAUGUGCAAGUCGCCGGA ...(((((((----((.((.((((....))))..)).)))))))))...((((((.........).))))).. ( -20.00, z-score = -2.42, R) >droSec1.super_15 1150697 69 - 1954846 GAAAUGGAAA----AAACUAGCGAAAACUCGCAAAGGUUUUUCCAUAAACGGUGGAUUGUGCAAGUCGCCGGA ...(((((((----((.((.((((....))))..)).)))))))))...(((((..((....))..))))).. ( -21.90, z-score = -3.08, R) >droYak2.chrX 19017804 68 - 21770863 GGCAUGGAA-----AAACUGGCGAAAACUCGCAAAGGUUUUUCCAUAAACGGUGCAUUGUGCAAGUGGCCCGA (((((((((-----(((((.((((....))))...)))))))))))..((..(((.....))).)).)))... ( -27.00, z-score = -3.45, R) >droEre2.scaffold_4690 14068353 68 + 18748788 GAAUUGGAA-----AAACUAGCGAAAAGUCGCAAAUGUUUUUCCAUAAACGGUGCAAUGUGCAAGUUGCCGGA ....(((((-----((((..((((....))))....)))))))))....(.(.(((((......)))))).). ( -20.20, z-score = -2.59, R) >consensus GAAAUGGAAA____AAACUAGCGAAAACUCGCAAAGGUUUUUCCAUAAACGGUGCAUUGUGCAAGUCGCCGGA ...((((((.....(((((.((((....))))...)))))))))))...(((((.(((.....)))))))).. (-14.04 = -15.12 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:37 2011