| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,434,613 – 10,434,704 |
| Length | 91 |
| Max. P | 0.834463 |
| Location | 10,434,613 – 10,434,704 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.49 |
| Shannon entropy | 0.30115 |
| G+C content | 0.48466 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.64 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10434613 91 - 22422827 CAUGGCCAAGUUGAAGUUUGAGA--GCGGCGUUGCCGCACUUCUCCUUCUCUUGGCACCCCGAUUUUUUCCACUUCUCGU--GUUUUAUUUUCGG- ....((((((..((((...(((.--(((((...))))).)))...)))).))))))...((((.......(((.....))--)........))))- ( -29.86, z-score = -3.81, R) >droSim1.chrX_random 2952869 96 - 5698898 CAUGGCCAAGUUGAAGUUUGGGAGCGCGGCGUUGCCGCACUUCGCCUUCUCUUGGCACCCCGAUAUUUUCCACUUCUCUUUAGUUAUAUUUUUUGG ....((((((..((((....((((.(((((...))))).))))..)))).))))))...((((........(((.......)))........)))) ( -28.59, z-score = -2.15, R) >droSec1.super_15 1134227 96 - 1954846 CAUGGCCAAGUUGAAGUUUGGGAGCGCGGCGUUGCCGCACUUCGCCUUCUCUUGGCACCCCGAUAUUUUCCACUUCUCUUUAGUUAUAUUUUUUGG ....((((((..((((....((((.(((((...))))).))))..)))).))))))...((((........(((.......)))........)))) ( -28.59, z-score = -2.15, R) >droEre2.scaffold_4690 14051343 84 + 18748788 CAUGGCCAAGUUGAAGUUCGAGA--GCGGCGUUGCCGCACUUC---UUCUCUUGCCACCCCGAUAUGUUCA----CUUGU--AUUUCAUUUUUGG- ..((((.(((..((((...(((.--(((((...))))).))))---))).)))))))..((((.(((....----.....--....)))..))))- ( -22.22, z-score = -1.64, R) >droYak2.chrX 19000922 91 - 21770863 CAUGGCCAAGUUGAAGUUGGAGA--GCGCCGUUGCCGCACUUC---UACUCUUGGCACCCCGAAAUUUCUCACUUCUUUCUAUUCAUUUUUUUUGG ....((((((....(((.((((.--(((.......))).))))---.)))))))))...((((((.........................)))))) ( -19.41, z-score = -0.62, R) >consensus CAUGGCCAAGUUGAAGUUUGAGA__GCGGCGUUGCCGCACUUC_CCUUCUCUUGGCACCCCGAUAUUUUCCACUUCUCUUUAGUUAUAUUUUUUGG ....((((((..((((...(((...(((((...))))).)))...)))).))))))........................................ (-16.88 = -17.64 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:34 2011