Locus 13989

Sequence ID	dm3.chrX
Location	10,432,522 – 10,432,711
Length	189
Max. P	0.980173

overview

Window 1

Location	10,432,522 – 10,432,632
Length	110
Sequences	5
Columns	116
Reading direction	forward
Mean pairwise identity	86.54
Shannon entropy	0.23407
G+C content	0.39603
Mean single sequence MFE	-32.42
Consensus MFE	-23.52
Energy contribution	-23.88
Covariance contribution	0.36
Combinations/Pair	1.04
Mean z-score	-2.83
Structure conservation index	0.73
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	2.04
SVM RNA-class probability	0.980173
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10432522 110 + 22422827
AUCUCAAUUGCUUUCGGGGGCGUGGCAGUUUGAGGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAUUGAAAUCGUUUACAUAUGUACAUUCAAUAUGUAU------
...(((((((...((.((((((..(((((....(((((((.....))))))))))))..).))))).))...))))))).......(((((((.........))))))).------ ( -33.70, z-score =  -3.33, R)
>droSim1.chrX_random 2950857 105 + 5698898
AUCUCAAUUGCUUUCGGGGGCGGGGCAGUUUGAGGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAUUGAAAUCGUUUACAUAUUUACAU-----AUGUAU------
...(((((((...((.((((((.((((((....(((((((.....))))))))))))).).))))).))...))))))).......(((((((....))-----))))).------ ( -30.80, z-score =  -3.07, R)
>droSec1.super_15 1132237 105 + 1954846
AUCUCAAUUGCUUUCGGGGGCGGGGCAGUUUGAGGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAUUGAAAUCGUUUACAUAUUUACAU-----AUGUAU------
...(((((((...((.((((((.((((((....(((((((.....))))))))))))).).))))).))...))))))).......(((((((....))-----))))).------ ( -30.80, z-score =  -3.07, R)
>droEre2.scaffold_4690 14049274 105 - 18748788
AUCUCAAUUGCUUUCGGAGGCGGGGCAGUUUGAAGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAAUGAAAUUGUUCACAUAUGUGCAUAUG-CAU----------
...(((.(((..(((((((..(.((((((..((((.(((....)))..)))))))))).)..)))))))...))).)))..............((((....)-)))---------- ( -22.90, z-score =   0.63, R)
>droYak2.chrX 18998780 115 + 21770863
AUCUCAAUUGCUUUCGGAGGCGGGGCAGUUUGAGGCAUCAACAGAUGAUUUCGCUGUUGCGGUUCCGGAUUGUAAUUGAAAUUGUUCACAUGUGUAUGUAUA-UACACAUACAUAC
...((((((((.(((((((.((.((((((..((((((((....)))).)))))))))).)).)))))))..))))))))...........(((((((((...-...))))))))). ( -43.90, z-score =  -5.31, R)
>consensus
AUCUCAAUUGCUUUCGGGGGCGGGGCAGUUUGAGGAAUCAACAGAUGAUUUCGCUGUUGCAGUUCCGGAUUAUAAUUGAAAUCGUUUACAUAUGUACAU_____AUGUAU______
...(((((((..(((((((..(.((((((....(((((((.....))))))))))))).)..)))))))...)))))))..................................... (-23.52 = -23.88 +   0.36)

alignment

secondary structure

dotplot

Window 2

Location	10,432,602 – 10,432,711
Length	109
Sequences	4
Columns	111
Reading direction	forward
Mean pairwise identity	70.11
Shannon entropy	0.45911
G+C content	0.36380
Mean single sequence MFE	-21.80
Consensus MFE	-14.81
Energy contribution	-15.25
Covariance contribution	0.44
Combinations/Pair	1.20
Mean z-score	-1.14
Structure conservation index	0.68
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.67
SVM RNA-class probability	0.781528
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10432602 109 + 22422827
AUCGUUUACAUAUGUACAUUCAAUAUGUAUCUGUGGCAGUCAGAAGACGAUGUUUGCCUUGGGGCAAGUUCAAC--GUAUUUGCAACGAUGUUCUCUAUUCAAAAAAAUAU
((((((..((((.((((((.....)))))).))))((((((....)))((...(((((....)))))..))...--.....)))))))))..................... ( -25.20, z-score =  -1.44, R)
>droSim1.chrX_random 2950937 103 + 5698898
AUCGUUUACAUAUUUACAU-----AUGUAUCUGUGGCAGUCAGUAGACGCUGUUUGCCUAGGGGCAAGUGCAAC--GUAUUUCCAACGAUAGUCUCUAUU-GAAGAAUUAU
.((.....((((..(((..-----..)))..))))....((((((((.((((((((((....)))))......(--((.......)))))))).))))))-)).))..... ( -25.60, z-score =  -1.27, R)
>droSec1.super_15 1132317 86 + 1954846
AUCGUUUACAUAUUUACAU-----AUGUAUCUGUGGCAGUCAGUAGAAGAUGUUUGCCUAGGGGCAAGUUCAAC--GUAUUUCCAACGAAUAU------------------
.((((((((((((....))-----))))).....((.(((..((.(((....((((((....))))))))).))--..))).)))))))....------------------ ( -18.20, z-score =  -0.99, R)
>droEre2.scaffold_4690 14049354 92 - 18748788
AUUGUUCACAUAUGUGCAU-----AUGCAUAAGUGGCAGUCAAAAGACGAUGUAUCUCUAGGGGCAAGUUCAACUGAAAAGUUUAUUGAAAAAAUAU--------------
.((((((.(((.(((((..-----..))))).)))...(((....))).............)))))).(((((((....)))....)))).......-------------- ( -18.20, z-score =  -0.86, R)
>consensus
AUCGUUUACAUAUGUACAU_____AUGUAUCUGUGGCAGUCAGAAGACGAUGUUUGCCUAGGGGCAAGUUCAAC__GUAUUUCCAACGAAAAUCUCU______________
.(((((..((((.((((((.....)))))).))))...(((....)))((...(((((....)))))..)).............)))))...................... (-14.81 = -15.25 +   0.44)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:33 2011