| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,427,755 – 10,427,828 |
| Length | 73 |
| Max. P | 0.880943 |
| Location | 10,427,755 – 10,427,828 |
|---|---|
| Length | 73 |
| Sequences | 8 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 66.83 |
| Shannon entropy | 0.64531 |
| G+C content | 0.44445 |
| Mean single sequence MFE | -18.62 |
| Consensus MFE | -7.16 |
| Energy contribution | -8.60 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10427755 73 - 22422827 UUAAG-UUGGGAAGCCCCAAUCGAAAAACUGAGUGGAGUGG--GUGAAGCCCCAAGUUUAUUCCAUUCCACUUACG ....(-(((((....))))))........((((((((((((--(..((((.....))))..))))))))))))).. ( -27.20, z-score = -4.22, R) >droWil1.scaffold_180702 3681519 75 - 4511350 UUGAG-CACAUAACUUUUGACGAAAAGACAGAGGAAAGGGAACACAAAGCUCAAUGUUUAUUGCAUUCCACUUAUG .((((-(......((((((.(.....).))))))...(....).....)))))((((.....)))).......... ( -12.90, z-score = -1.17, R) >droPer1.super_21 702925 61 - 1645244 ------UUGAACAG---CAGCAGAGGGGCU--GUGGGGGAG--GCAAAGCUCAAAGUUUAUUGCAUUCCACUUA-- ------.......(---((((......)))--))(((((((--(((((((.....)))..)))).)))).))).-- ( -15.50, z-score = -0.24, R) >dp4.chrXL_group1e 5773271 61 - 12523060 ------UUGAACAG---CGGCAGAGGGGCU--GUGGGGGAG--GCAAAGCUCAAAGUUUAUUGCAUUCCACUUA-- ------.......(---((((......)))--))(((((((--(((((((.....)))..)))).)))).))).-- ( -14.80, z-score = 0.10, R) >droYak2.chrX 18993871 74 - 21770863 UUAAGUUAGGGAGCCCCAAAACGCAAAAAUGAAUGGAGUGG--GCAAAGCUCCAAGUUUAUUGCAUUCCACUUACG .(((((..(((...))).....((((((((...((((((..--.....)))))).)))).)))).....))))).. ( -17.80, z-score = -1.15, R) >droEre2.scaffold_4690 14044513 69 + 18748788 UUAAGUUGGGGAG----CAAACAAAAAA-AAAGGGGGCGGG--GUAAAGCUCCAAGUUUAUUUCCUUCCACUUACG .(((((.((((((----.((((......-....(((((...--.....)))))..)))).))))))...))))).. ( -16.70, z-score = -0.94, R) >droSec1.super_15 1127653 73 - 1954846 UUAAGUUUGUUAAGCCCCAAUCGAGAAA-UGAGUGGAGUGG--GUAAAGCUCCAAGUUUAGUGCAUUCCACUUACG ............................-(((((((((((.--(..((((.....))))..).))))))))))).. ( -18.60, z-score = -2.21, R) >droSim1.chrU 3681616 73 + 15797150 UUAAGUUUGGGAAGCCCCAAUCGAAAAA-UGAGUGGAGUGG--GUAAAGCUCCAAGUUUUUUGCAUUCCACUUACG ....(.(((((....))))).)......-(((((((((((.--(.(((((.....))))).).))))))))))).. ( -25.50, z-score = -3.77, R) >consensus UUAAG_UUGGGAAGCCCCAACCGAAAAACUGAGUGGAGGGG__GCAAAGCUCCAAGUUUAUUGCAUUCCACUUACG ..............................((((((((((......((((.....))))....))))))))))... ( -7.16 = -8.60 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:28 2011