| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,388,524 – 10,388,630 |
| Length | 106 |
| Max. P | 0.698037 |
| Location | 10,388,524 – 10,388,630 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.38 |
| Shannon entropy | 0.42952 |
| G+C content | 0.33974 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -11.90 |
| Energy contribution | -12.03 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.698037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10388524 106 + 22422827 ---------AACUAUAAGCUUCAUAUUGACAAUAUAACGUCAACAGCUAUAUAGCUAUGACCUUUUAGUUUUCCAGCUGAAACCUGAACAUGUCCUUGAAGGAAUUGCUUGAUGU ---------.....(((((((((..(((((........)))))(((((....(((((........)))))....))))).....))))....(((.....)))...))))).... ( -22.10, z-score = -1.83, R) >droEre2.scaffold_4690 14008975 89 - 18748788 ---------AACUAUAAGCGUUAUAUUGAUAAUAUAAAGU-----------------UGACCUUUUAGUUUACCAGCUGAAACCUGAACAUGUCCUUGACGGAAUUGUUUGAUGU ---------........((((((....((((((.....((-----------------(.(..(((((((......)))))))..).)))...(((.....))))))))))))))) ( -13.50, z-score = -0.69, R) >droYak2.chrX 18962349 108 + 21770863 AACUAUAUCAUAAACGAGUAUCAUAUUACGAAUAUUAUAUAAAC-------UUAAUUUGACCUUUCAGUUUUCCAGCUGAAACCCGAACAUGUCCUUGAAGGAUUGGUUUGAUGC ...(((((.(((.....(((......)))...))).)))))...-------...........(((((((......)))))))..(((((..((((.....))))..))))).... ( -16.80, z-score = -0.44, R) >droSec1.super_15 1095874 100 + 1954846 ---------GACUAAAAGCAUCACAUUGACAAUAUAACGUCAACAGCAA------UUUGACCUUUUAGUUUUCUAGCUGAAACCUGAACAUGUCCUUGAAGGAAUUGCUUGAUGU ---------........((((((..(((((........))))).(((((------((((((..(((((.((((.....)))).)))))...))).......)))))))))))))) ( -22.41, z-score = -2.24, R) >consensus _________AACUAUAAGCAUCAUAUUGACAAUAUAACGUCAAC___________UUUGACCUUUUAGUUUUCCAGCUGAAACCUGAACAUGUCCUUGAAGGAAUUGCUUGAUGU .................(((((........................................((((((((....))))))))...(((((..(((.....)))..)))))))))) (-11.90 = -12.03 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:24 2011