| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,387,742 – 10,387,837 |
| Length | 95 |
| Max. P | 0.629632 |
| Location | 10,387,742 – 10,387,837 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.54 |
| Shannon entropy | 0.30148 |
| G+C content | 0.48347 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -15.50 |
| Energy contribution | -16.67 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10387742 95 + 22422827 CUGCUCUAAACGCGGCCAAUGCAAAACUAAUUCUGAACUUCAUACGCAUUAGUUUAUAAGACGGCGACGGC------------AUCUCCGCCGUCGACGUCGCAGUC ((((.......(((.....))).((((((((.(((.....))...).))))))))....((((.(((((((------------......))))))).)))))))).. ( -31.20, z-score = -3.27, R) >droSec1.super_15 1095133 95 + 1954846 CUGCUCUAAACGCGGCCAAUGCAAAACUAAUUCUGAACUUCAUACGCAUUAGUUUAUAAGACGGCGACGGC------------AUCUCCGCCGUCGACGUCGCAGUC ((((.......(((.....))).((((((((.(((.....))...).))))))))....((((.(((((((------------......))))))).)))))))).. ( -31.20, z-score = -3.27, R) >droYak2.chrX 18961078 101 + 21770863 CUGCUCUAAACGCGGCCAAUGCAAAACUAAUUCUGAACUUCAUACGCAUUAGUUUAUAAGACGGCAACGGCGACGCC------AUCUCCGCUGUCGACGUCGCAGUC ((((.......(((.....))).((((((((.(((.....))...).))))))))....((((.(.((((((.....------.....)))))).).)))))))).. ( -24.40, z-score = -0.49, R) >droEre2.scaffold_4690 14008205 107 - 18748788 CUGCUCUAAACGCGGCCAAUGCAAAACUAAUUCUGAACUUCAUACGCAUUAGUUUAUAAGACGGCGACGGCGACGGCGACUGCAUCUCCGCUGUCGACGUCGCAGCC ((((.......)))).....((.((((((((.(((.....))...).))))))))........((((((.((((((((..........)))))))).)))))).)). ( -33.40, z-score = -1.74, R) >droMoj3.scaffold_6473 5254254 92 + 16943266 UUGCUCUAAACGCGGCCAAUGCAAAACUAAUGCUGAACUUCAUACGCAUUAGUUUAUAAGACUGCAACAACGAU---------AACGAUGACGCUGACGUU------ ........((((((((...((((((((((((((((.....))...)))))))))).......)))).((.((..---------..)).))..)))).))))------ ( -21.21, z-score = -2.29, R) >droGri2.scaffold_15203 4683732 91 - 11997470 UUGCUCUAAACGCGGCCAAUGCAAAACUAAUGCUGAACUUCAUACGCAUUAGUUUAUAAGACUGUAACAACGAC---------AACGCCAA-GCCAGCGUC------ .........(((((((....((.((((((((((((.....))...)))))))))).......(((.......))---------)..))...-))).)))).------ ( -21.00, z-score = -1.68, R) >consensus CUGCUCUAAACGCGGCCAAUGCAAAACUAAUUCUGAACUUCAUACGCAUUAGUUUAUAAGACGGCAACGGCGAC_________AUCUCCGCCGUCGACGUCGCAGUC ((((.......))))........((((((((.(((.....))...).))))))))....((((.((((((((................)))))))).))))...... (-15.50 = -16.67 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:23 2011