| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,381,032 – 10,381,143 |
| Length | 111 |
| Max. P | 0.982114 |
| Location | 10,381,032 – 10,381,143 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.80 |
| Shannon entropy | 0.26969 |
| G+C content | 0.48733 |
| Mean single sequence MFE | -28.24 |
| Consensus MFE | -20.92 |
| Energy contribution | -21.72 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.982114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10381032 111 - 22422827 CCCACC-CAAAACGCACUCCAACUGUUUGGGCCACCCACGCGAAAUCCGUGUACCUUUGGCCCAGGGUAACAGAACCAGUAUUAGUUAUAUUACACAUACUAUAGCCAGCCA ......-......((.......((((((((((((...(((((.....))))).....)))))))....)))))....(((((..((......))..)))))...))...... ( -25.50, z-score = -1.13, R) >droEre2.scaffold_4690 14001470 110 + 18748788 CCUACC-CAAAACUCUCCGAAACUGUUCGGACCACCCACGCGAAAUCCGUGUACCUUUGGCCCAGAGUAACAGUACCAGUGUUAGUUGUAGUACACACGCUAUCACAACCA- ......-....((((((((((....))))))(((...(((((.....))))).....)))....))))..........(((.(((((((.....))).)))).))).....- ( -23.10, z-score = -0.88, R) >droYak2.chrX 18954152 102 - 21770863 UUCACCACAAAACUCACUCCAACUUUUUGGGCCACCCACGCGAAAUCCGUGUACCUUUGGCCCAGAGUAGC---------AUUUGUUAUAGUACACAUACAAUAACAAGCA- ........................((((((((((...(((((.....))))).....))))))))))..((---------..(((((((.(((....))).))))))))).- ( -27.40, z-score = -4.27, R) >droSec1.super_15 1088138 110 - 1954846 CCCACC-CAAAACACACUCCAACUGUUUGGGCCACCCACGCGAAAUCCGUGUACCUUUGGCCCAGGGUAACAGAACCAGUAUUAGUUAUAGUACACAUACUAUAG-CAGCCG ...(((-(.(((((.........)))))((((((...(((((.....))))).....)))))).))))................(((((((((....))))))))-)..... ( -32.60, z-score = -3.55, R) >droSim1.chrX 8066796 110 - 17042790 CCCACC-CAAAACACACUCCAACUGUUUGGGCCACCCACGCGAAAUCCGUGUACCUUUGGCCCAGGGUAACAGAACCAGUAUUAGUUAUAGUACACAUACUAUAG-CAGCCG ...(((-(.(((((.........)))))((((((...(((((.....))))).....)))))).))))................(((((((((....))))))))-)..... ( -32.60, z-score = -3.55, R) >consensus CCCACC_CAAAACACACUCCAACUGUUUGGGCCACCCACGCGAAAUCCGUGUACCUUUGGCCCAGGGUAACAGAACCAGUAUUAGUUAUAGUACACAUACUAUAGCCAGCC_ .........................(((((((((...(((((.....))))).....)))))))))..................(((((((((....)))))))))...... (-20.92 = -21.72 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:22 2011