| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,347,372 – 10,347,483 |
| Length | 111 |
| Max. P | 0.645787 |
| Location | 10,347,372 – 10,347,483 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 92.77 |
| Shannon entropy | 0.10301 |
| G+C content | 0.36252 |
| Mean single sequence MFE | -23.54 |
| Consensus MFE | -18.24 |
| Energy contribution | -17.80 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.645787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10347372 111 + 22422827 GUUAAAGGGAUUCAAAACCCCACUCGGGGUUUAAGCAAAAAGUGUAGCAUGCUUUUCAGCGCAAACUUUAUUUAAGCCACUAUACAAACAUUCCAACUCUUUUCAUGAUUA ......(((((...(((((((....))))))).........((((((...((((...................))))..))))))....)))))................. ( -22.31, z-score = -1.72, R) >droSim1.chrX 8051892 110 + 17042790 AUUAAAGGGAUUCAAA-UCCCGCACGUGGUUUAAGCAAAAAGUGCACCAUGCUUUUCAGGGCAAACUUUAUUUAAGCCACUAUACAAACAUUCCAACUCUUUUCAUGAUUA ......(((((....)-))))....((((((((((.(((...(((.((.((.....)))))))...))).))))))))))............................... ( -24.00, z-score = -2.40, R) >droSec1.super_15 1054537 110 + 1954846 AUUAAAGGGAUUCAAA-UCCCUCACGUGGUUUAAGCAAAAAGUGCAUCAUGCUUUUCAGGGCAAACUUUUUUUAAGCCACUAUACAAACAUUCCAACUCUGUUCAUGAUUA .....((((((....)-)))))...(((((((((..(((((((......(((((....))))).))))))))))))))))............................... ( -24.30, z-score = -2.46, R) >consensus AUUAAAGGGAUUCAAA_UCCCACACGUGGUUUAAGCAAAAAGUGCACCAUGCUUUUCAGGGCAAACUUUAUUUAAGCCACUAUACAAACAUUCCAACUCUUUUCAUGAUUA ......(((.........)))....((((((((((.(((...(((.((.((.....)))))))...))).))))))))))............................... (-18.24 = -17.80 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:19 2011