| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,342,943 – 10,343,050 |
| Length | 107 |
| Max. P | 0.990188 |
| Location | 10,342,943 – 10,343,050 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 80.00 |
| Shannon entropy | 0.31442 |
| G+C content | 0.47989 |
| Mean single sequence MFE | -36.50 |
| Consensus MFE | -25.02 |
| Energy contribution | -28.15 |
| Covariance contribution | 3.13 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.990188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10342943 107 - 22422827 UAAAUUCGCUGAAUGCUGAAUGCUAUAUGCUGGAUACUGCUGAAUAGUACAUGCUGCUGGAUGGCAGUUCCCAGCAGGC--UGGCAUUGGCAUUCAGUUCACACGACCC .......((((((((((.(((((((..((((((..(((((((..(((((.....)))))..)))))))..))))))...--)))))))))))))))))........... ( -47.10, z-score = -4.87, R) >droEre2.scaffold_4690 13959688 85 + 18748788 UAAAUUCGCUGGAUGCUGAACAGUACAUGUU------------------------GCUGAAUGGCAGUUCCCAGCAGGCUUUGGCAUUGGCAUUCAGUUCACACGACCC .......((((((((((...(((((.....)------------------------))))((((.(((..((.....))..))).))))))))))))))........... ( -25.20, z-score = -0.75, R) >droSec1.super_15 1050168 96 - 1954846 UAAAUUCGCUGAAUGCUGGAUGCUAUAUGCUGGAUACU---GAAUAGUAC----------AUGGGAGUUCCCAGCAGGCUUUGGCAUUGGCAUUCAGUUCACACUACCC .......(.(((..(((((((((((.((((..((..((---(........----------.((((....)))).)))..))..)))))))))))))))))))....... ( -33.40, z-score = -2.68, R) >droSim1.chrX 8047484 106 - 17042790 UAAAUUCGCUGAAUGCUGGAUGCUAUAUGCUGGAUACU---GAAUAGUACAUGCUGCUGGAUGGCAGUUCCCAGCAGGCUUUGGCAUUGGCAUUCAGUUCACACGACCC .......(((((((((..(.(((((..((((((..(((---(..(((((.....))))).....))))..)))))).....))))))..)))))))))........... ( -40.30, z-score = -3.03, R) >consensus UAAAUUCGCUGAAUGCUGAAUGCUAUAUGCUGGAUACU___GAAUAGUAC_____GCUGGAUGGCAGUUCCCAGCAGGCUUUGGCAUUGGCAUUCAGUUCACACGACCC .......(((((((((..(.(((((..((((((.((((.......))))...((((((....))))))..)))))).....))))))..)))))))))........... (-25.02 = -28.15 + 3.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:18 2011