| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,341,960 – 10,342,051 |
| Length | 91 |
| Max. P | 0.679221 |
| Location | 10,341,960 – 10,342,051 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 82.05 |
| Shannon entropy | 0.24951 |
| G+C content | 0.36967 |
| Mean single sequence MFE | -20.73 |
| Consensus MFE | -12.61 |
| Energy contribution | -11.40 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10341960 91 + 22422827 CGUUUGUACACCGUGUCGUAUGCUUAAUGCGUAUACGUUAUCAUCUUACCUAGCUAAAUGUGUAACCGAAAUGAUAACUUAAAUAAACGAA (((((((.....(((((((((.....))))).))))((((((((.((.....((.....))......)).))))))))....))))))).. ( -21.50, z-score = -2.79, R) >droSim1.chrX 8046480 91 + 17042790 CUCUUGUACACCGUGUCGUAUGCUUAAUGCGUACACGUUAUCAGCUUACCUAGCUAAAUGUGUAACCGAAAUGAUAACUUAAAUAAACGAA .((...(((((((((((((((.....))))).))))).....((((.....))))....)))))...))...................... ( -19.70, z-score = -2.16, R) >droSec1.super_15 1049324 86 + 1954846 CUCUUUUACACCGUGUCGUAUACUUAAUGCGUAUACGUUAUUACCUUGCACAGCUACAUGUGCAAUUGAAAGG-----CAAAAAAAGCGAA ..((((((...((((((((((.....))))).)))))........(((((((......))))))).))))))(-----(.......))... ( -21.00, z-score = -1.87, R) >consensus CUCUUGUACACCGUGUCGUAUGCUUAAUGCGUAUACGUUAUCACCUUACCUAGCUAAAUGUGUAACCGAAAUGAUAACUUAAAUAAACGAA (.(((((....((((((((((.....))))).)))))........((((.((......)).)))).................))))).).. (-12.61 = -11.40 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:17 2011