| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,339,530 – 10,339,614 |
| Length | 84 |
| Max. P | 0.562294 |
| Location | 10,339,530 – 10,339,614 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 71.99 |
| Shannon entropy | 0.49784 |
| G+C content | 0.39810 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -13.36 |
| Energy contribution | -14.12 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10339530 84 + 22422827 UAUAUAUGCAGCUUAG-----AUAAGCAAACUGGCAAUCGAGAGAUUCAAUGAUUGCUGGAAUGUUUCUGGCAGCCGCCUUUGUGGGAU- ((((...((.((((..-----..)))).....(((((((....)))).......(((..((.....))..))))))))...))))....- ( -21.60, z-score = -0.42, R) >droSim1.chrX 8044186 84 + 17042790 UAUAUAUGCAGCUUAG-----AUAAGCAAACUGGCAAUCGAGAGAUUCAAUGAUUGCUGGAAUGUUUCUGGCAGUCGCCUUUGAAGGAU- ..........((((..-----..)))).....(((((((....))))....((((((..((.....))..)))))))))..........- ( -24.30, z-score = -1.89, R) >droSec1.super_15 1047065 84 + 1954846 UAUAUAUGCAGCUUAG-----AUAAGCAAACUGGCAAUCGAGAGAUUCAAUGAUUGCUGGAAUGUUUCUGGCAGUCGCCUUUGAAGGAU- ..........((((..-----..)))).....(((((((....))))....((((((..((.....))..)))))))))..........- ( -24.30, z-score = -1.89, R) >droYak2.chrX 18912992 84 + 21770863 -AUAUAUGCAGCUUGG-----AUAAGCAAACUGGCAAUCGAGAGAUUUAGUAAUUGCUGCAAUGUUUCUGGCAGGCGCCUUUGGGGAGCA -.....(((((((((.-----.....)))((((..((((....))))))))....)))))).((((((((((....)))....))))))) ( -23.10, z-score = -0.12, R) >droWil1.scaffold_180708 1101142 80 + 12563649 UGUACUUCGAACUUUGUGUCUAUUGUCAAACAUUAAAAUCAGAAAUUC--UGAUUCAAAAAACCUUUCUUACGAUGUCAGAU-------- ......((..((.(((((..((.((.....)).)).((((((.....)--)))))..............))))).))..)).-------- ( -8.70, z-score = 0.46, R) >consensus UAUAUAUGCAGCUUAG_____AUAAGCAAACUGGCAAUCGAGAGAUUCAAUGAUUGCUGGAAUGUUUCUGGCAGUCGCCUUUGAAGGAU_ ..........(((((.......))))).....(((((((....))))....((((((((((.....)))))))))))))........... (-13.36 = -14.12 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:17 2011