| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,336,735 – 10,336,873 |
| Length | 138 |
| Max. P | 0.554548 |
| Location | 10,336,735 – 10,336,873 |
|---|---|
| Length | 138 |
| Sequences | 4 |
| Columns | 148 |
| Reading direction | forward |
| Mean pairwise identity | 86.73 |
| Shannon entropy | 0.20754 |
| G+C content | 0.52774 |
| Mean single sequence MFE | -53.12 |
| Consensus MFE | -39.33 |
| Energy contribution | -41.20 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10336735 138 + 22422827 UCGAGCCCUUGGGAGUGGAAGUGAGGACAGAAUAGAAGUUGAUUCCGAGGCAUUAGAG--GCGGGACAAUUUAAGACAGCCUGCC--------AUUCUGUCAGUCUGCUGUCCUCGUGCUUCUGAUGCUCCUGAUGGUCCUGAUGGGA ..(..((.(..(((((((((((((((((((....(((.....)))..((((..(((((--(((((.(...........)))))))--------..))))...)))).))))))))..))))))...)))))..).))..)........ ( -49.70, z-score = -1.02, R) >droYak2.chrX 18910081 127 + 21770863 UCGAGCCCUUGGGAGCGGAAGUGAGGACAGAACUGAAGUUGAUUCCGAGGCAUUAGAGAGGCGGGACAAUUUAAGACAGCCUGCC--------AUUCUAACAGU--GCUGUCU--GCUGUCCUGAUGCUCCUGAUGGGA--------- .....((((..(((((....((.(((((((.....((((((.(((((...(......)...))))))))))).((((((((((..--------.......))).--)))))))--.))))))).)))))))..).))).--------- ( -52.40, z-score = -3.43, R) >droSec1.super_15 1044274 146 + 1954846 UCGAGCCCUUGGGAGCGGAAGUGAGGACAGAAUAGAAGUUGAUUCCGAGGCAUUAGAG--GCGGGACAAUUUAAGACAGCCUGCCAUUCUGCCAUUCUGUCAGUCUGCUGUCCUCGUGCUUCUGAUGCUCCUGAUGGUCCUGAUGGGA ..(..((.(..(((((((((((((((((((..((((...((((.....((((..(..(--(((((.(...........))))))).)..)))).....)))).))))))))))))..))))))...)))))..).))..)........ ( -56.00, z-score = -1.62, R) >droSim1.chrX 8041414 146 + 17042790 UCGAGCCCUUGGGAGCGGAAGUGCGGACAGAAUAGAAGUUGAUUCCGAGGCAUUAGAG--GCGGGACAAUUUAAGACAGCCUGCCAUUCUGCCAUUCUGUCAGUCUGCUGUCCUCGUGCUUCUGAUGCUCCUGAUGGUCCUGAUGGGA ..(..((.(..((((((((((..(((((((..((((...((((.....((((..(..(--(((((.(...........))))))).)..)))).....)))).))))))))))..)..)))))...)))))..).))..)........ ( -54.40, z-score = -1.12, R) >consensus UCGAGCCCUUGGGAGCGGAAGUGAGGACAGAAUAGAAGUUGAUUCCGAGGCAUUAGAG__GCGGGACAAUUUAAGACAGCCUGCC________AUUCUGUCAGUCUGCUGUCCUCGUGCUUCUGAUGCUCCUGAUGGUCCUGAUGGGA ....(((.(..(((((((((((((((((((.....((((((.(((((...(......)...)))))))))))..(((((.................)))))......))))))))..))))))...)))))..).))).......... (-39.33 = -41.20 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:14 2011